Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10550 | 5' | -49.4 | NC_002687.1 | + | 230139 | 1.07 | 0.027658 |
Target: 5'- cAACACGAUUUGGUGUGCUACACAGCAg -3' miRNA: 3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 230017 | 0.77 | 0.833111 |
Target: 5'- cAACACGAcUUaGUGUGCgACACAGCAg -3' miRNA: 3'- -UUGUGCUaAAcCACACGaUGUGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229958 | 0.71 | 0.988023 |
Target: 5'- uAGCACGGUgagacGUGCUGCAUAGCu -3' miRNA: 3'- -UUGUGCUAaaccaCACGAUGUGUCGu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229895 | 0.94 | 0.161567 |
Target: 5'- cAACACGAUUUaGUGUGCUACACAGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACACGAUGUGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229836 | 0.71 | 0.988023 |
Target: 5'- uAGCACGGUgagacGUGCUGCAUAGCu -3' miRNA: 3'- -UUGUGCUAaaccaCACGAUGUGUCGu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229773 | 1.07 | 0.027658 |
Target: 5'- cAACACGAUUUGGUGUGCUACACAGCAg -3' miRNA: 3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229656 | 0.68 | 0.99928 |
Target: 5'- uGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3' miRNA: 3'- uUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229653 | 0.94 | 0.161567 |
Target: 5'- cAACACGAUUUaGUGUGCUACACAGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACACGAUGUGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229592 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAccuuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229532 | 0.88 | 0.322221 |
Target: 5'- cAACACGAUUa-GUGUGCUACACAGCAg -3' miRNA: 3'- -UUGUGCUAAacCACACGAUGUGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229527 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229462 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229410 | 0.87 | 0.394461 |
Target: 5'- cAACACGAcUUaGUGUGCUACACAGCAg -3' miRNA: 3'- -UUGUGCUaAAcCACACGAUGUGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229397 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229332 | 0.67 | 0.999485 |
Target: 5'- cAGCACGAUUUaGUGaGCUACGCAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229268 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAccuuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229263 | 0.66 | 0.999792 |
Target: 5'- uAACACGAUUUGucGUGCUGCAaGGgGa -3' miRNA: 3'- -UUGUGCUAAACcaCACGAUGUgUCgU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229203 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229138 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229074 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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