Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10550 | 5' | -49.4 | NC_002687.1 | + | 55147 | 0.66 | 0.999902 |
Target: 5'- uAAUACGAUUUauUGUGCUGCAgGGgGa -3' miRNA: 3'- -UUGUGCUAAAccACACGAUGUgUCgU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54818 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54753 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAcccuuuugucccccuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54688 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54542 | 0.68 | 0.998603 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAu-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54413 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54348 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54283 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54219 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54154 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54089 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 54025 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 53944 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 53817 | 0.67 | 0.999485 |
Target: 5'- cAGCACGAUUUaGUGaGCUACGCAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 53752 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAccuuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 53688 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 53623 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 53558 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAucuuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 53494 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 53429 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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