miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10550 5' -49.4 NC_002687.1 + 53236 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 53494 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 53688 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 54219 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 54413 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 156186 0.68 0.999047
Target:  5'- cGCACGAggUUGGUgGUGCUcuuCAUGGUAc -3'
miRNA:   3'- uUGUGCUa-AACCA-CACGAu--GUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 52854 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 229773 1.07 0.027658
Target:  5'- cAACACGAUUUGGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 229532 0.88 0.322221
Target:  5'- cAACACGAUUa-GUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAacCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 228687 0.68 0.998929
Target:  5'- cAGCACGAUUUaGUGaGCUACGCAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229958 0.71 0.988023
Target:  5'- uAGCACGGUgagacGUGCUGCAUAGCu -3'
miRNA:   3'- -UUGUGCUAaaccaCACGAUGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 229592 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAccuuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 232285 0.69 0.996677
Target:  5'- aGGCAUGAuUUUGGUGUG-UGCACuGCc -3'
miRNA:   3'- -UUGUGCU-AAACCACACgAUGUGuCGu -5'
10550 5' -49.4 NC_002687.1 + 230829 0.71 0.989451
Target:  5'- uAACACGAUUUaucgugaugcaGGUacacggugagacGUGCUGCAUAGCu -3'
miRNA:   3'- -UUGUGCUAAA-----------CCA------------CACGAUGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 230444 0.71 0.989451
Target:  5'- uAGCACGcUgaGGcGUGCUGCAUAGCu -3'
miRNA:   3'- -UUGUGCuAaaCCaCACGAUGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 229836 0.71 0.988023
Target:  5'- uAGCACGGUgagacGUGCUGCAUAGCu -3'
miRNA:   3'- -UUGUGCUAaaccaCACGAUGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 170965 0.69 0.997616
Target:  5'- cAGCACGGcUUGGUGUGUga-GCAGg- -3'
miRNA:   3'- -UUGUGCUaAACCACACGaugUGUCgu -5'
10550 5' -49.4 NC_002687.1 + 228192 0.68 0.998704
Target:  5'- nAGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229527 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 229203 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.