miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10550 5' -49.4 NC_002687.1 + 229074 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229203 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 229527 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 228192 0.68 0.998704
Target:  5'- nAGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228622 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAccucuauguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228232 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228362 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228491 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229009 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229138 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 228944 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 228880 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 332885 0.66 0.999873
Target:  5'- gAACGCcag--GGUGUGCUGCAgCcGCAa -3'
miRNA:   3'- -UUGUGcuaaaCCACACGAUGU-GuCGU- -5'
10550 5' -49.4 NC_002687.1 + 304176 0.66 0.999833
Target:  5'- -cCGCGAUgacgUUGGUgcgggugGUGCUGC-CGGCGa -3'
miRNA:   3'- uuGUGCUA----AACCA-------CACGAUGuGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 203228 0.66 0.999792
Target:  5'- aAGCACGAgggaaaccugUUUGGcgGUGaugacgaacguCUGCACGGCAu -3'
miRNA:   3'- -UUGUGCU----------AAACCa-CAC-----------GAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 229332 0.67 0.999485
Target:  5'- cAGCACGAUUUaGUGaGCUACGCAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 229656 0.68 0.99928
Target:  5'- uGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3'
miRNA:   3'- uUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228687 0.68 0.998929
Target:  5'- cAGCACGAUUUaGUGaGCUACGCAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228297 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 228426 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.