Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10550 | 5' | -49.4 | NC_002687.1 | + | 228297 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 228687 | 0.68 | 0.998929 |
Target: 5'- cAGCACGAUUUaGUGaGCUACGCAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229656 | 0.68 | 0.99928 |
Target: 5'- uGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3' miRNA: 3'- uUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229332 | 0.67 | 0.999485 |
Target: 5'- cAGCACGAUUUaGUGaGCUACGCAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 203228 | 0.66 | 0.999792 |
Target: 5'- aAGCACGAgggaaaccugUUUGGcgGUGaugacgaacguCUGCACGGCAu -3' miRNA: 3'- -UUGUGCU----------AAACCa-CAC-----------GAUGUGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 304176 | 0.66 | 0.999833 |
Target: 5'- -cCGCGAUgacgUUGGUgcgggugGUGCUGC-CGGCGa -3' miRNA: 3'- uuGUGCUA----AACCA-------CACGAUGuGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 332885 | 0.66 | 0.999873 |
Target: 5'- gAACGCcag--GGUGUGCUGCAgCcGCAa -3' miRNA: 3'- -UUGUGcuaaaCCACACGAUGU-GuCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 55147 | 0.66 | 0.999902 |
Target: 5'- uAAUACGAUUUauUGUGCUGCAgGGgGa -3' miRNA: 3'- -UUGUGCUAAAccACACGAUGUgUCgU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 228426 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 228880 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 228362 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 228232 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 228622 | 0.69 | 0.997774 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAccucuauguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 228192 | 0.68 | 0.998704 |
Target: 5'- nAGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229527 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229203 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 229138 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUACACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 228944 | 0.68 | 0.998843 |
Target: 5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3' miRNA: 3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 224721 | 0.66 | 0.999902 |
Target: 5'- uGGCACGGUccagaUGGUGUGCagggaggauaUGUACGGCGa -3' miRNA: 3'- -UUGUGCUAa----ACCACACG----------AUGUGUCGU- -5' |
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10550 | 5' | -49.4 | NC_002687.1 | + | 230139 | 1.07 | 0.027658 |
Target: 5'- cAACACGAUUUGGUGUGCUACACAGCAg -3' miRNA: 3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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