miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10554 3' -48.7 NC_002687.1 + 29960 0.66 0.99999
Target:  5'- cGCGAucggcGUAGCGUGUUucgcCCUgucaagauugACAUCCa -3'
miRNA:   3'- -CGCU-----CGUCGUACAAuu--GGA----------UGUAGGg -5'
10554 3' -48.7 NC_002687.1 + 234218 0.66 0.99999
Target:  5'- cGCGAGCucgaccagagaaAGCGUG---ACCaGCAggCCCg -3'
miRNA:   3'- -CGCUCG------------UCGUACaauUGGaUGUa-GGG- -5'
10554 3' -48.7 NC_002687.1 + 284445 0.66 0.999986
Target:  5'- uGUGAGCAGCGUGagcGAUCa--AUCCg -3'
miRNA:   3'- -CGCUCGUCGUACaa-UUGGaugUAGGg -5'
10554 3' -48.7 NC_002687.1 + 295705 0.66 0.999986
Target:  5'- aGCgGAGCAGCggGgcugauGCCgUGCA-CCCu -3'
miRNA:   3'- -CG-CUCGUCGuaCaau---UGG-AUGUaGGG- -5'
10554 3' -48.7 NC_002687.1 + 82184 0.66 0.999986
Target:  5'- cUGAGCAGCcggaAUGggGAUCgACAUCUg -3'
miRNA:   3'- cGCUCGUCG----UACaaUUGGaUGUAGGg -5'
10554 3' -48.7 NC_002687.1 + 316892 0.66 0.999981
Target:  5'- cGCGGGCAGCucg--AACgUccGgAUCCCg -3'
miRNA:   3'- -CGCUCGUCGuacaaUUGgA--UgUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 204231 0.66 0.999981
Target:  5'- cGCGAGUGGCGcGUacgauauuucUGACCUggACgAUUCCg -3'
miRNA:   3'- -CGCUCGUCGUaCA----------AUUGGA--UG-UAGGG- -5'
10554 3' -48.7 NC_002687.1 + 18581 0.66 0.999981
Target:  5'- cGCGAugGCGGCggGggAAgCUGugguCAUCCCc -3'
miRNA:   3'- -CGCU--CGUCGuaCaaUUgGAU----GUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 184351 0.66 0.999981
Target:  5'- cGCGGaaAGCAau---ACUUGCAUCCCa -3'
miRNA:   3'- -CGCUcgUCGUacaauUGGAUGUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 305861 0.66 0.999974
Target:  5'- uGUG-GCAGCAUGUUGGCUcacCGUgUCa -3'
miRNA:   3'- -CGCuCGUCGUACAAUUGGau-GUAgGG- -5'
10554 3' -48.7 NC_002687.1 + 8981 0.66 0.999974
Target:  5'- uGCGGcccauCAGCGUgGUUGACuCUGCGaauaacUCCCg -3'
miRNA:   3'- -CGCUc----GUCGUA-CAAUUG-GAUGU------AGGG- -5'
10554 3' -48.7 NC_002687.1 + 35788 0.66 0.999974
Target:  5'- aGCGAgGCAaaGUGUagcuUAGCgUACAUCCg -3'
miRNA:   3'- -CGCU-CGUcgUACA----AUUGgAUGUAGGg -5'
10554 3' -48.7 NC_002687.1 + 227839 0.66 0.999974
Target:  5'- uGCGAGCGGCc-----ACCUcccacggACAUCCUu -3'
miRNA:   3'- -CGCUCGUCGuacaauUGGA-------UGUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 153252 0.66 0.999974
Target:  5'- aGC-AGCAGCAgc--GGCCU-CGUCCUg -3'
miRNA:   3'- -CGcUCGUCGUacaaUUGGAuGUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 181791 0.67 0.999955
Target:  5'- --uGGCGGCAcg--GACCUuCAUCCCc -3'
miRNA:   3'- cgcUCGUCGUacaaUUGGAuGUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 105308 0.67 0.999944
Target:  5'- gGUGGGCGGCAauggacgacgacugGUUGcagagacGCCUGCGaugaggaUCCCa -3'
miRNA:   3'- -CGCUCGUCGUa-------------CAAU-------UGGAUGU-------AGGG- -5'
10554 3' -48.7 NC_002687.1 + 126706 0.67 0.999941
Target:  5'- gGCGGGCaucAGCAgcgaggGUgcAgCUGCAUuCCCg -3'
miRNA:   3'- -CGCUCG---UCGUa-----CAauUgGAUGUA-GGG- -5'
10554 3' -48.7 NC_002687.1 + 328779 0.67 0.999941
Target:  5'- gGCGaAGCAGC-UGgu-GCCaGCAUgCCu -3'
miRNA:   3'- -CGC-UCGUCGuACaauUGGaUGUAgGG- -5'
10554 3' -48.7 NC_002687.1 + 253279 0.67 0.999941
Target:  5'- aCGAGCAGCGcGUcGACCggu-UUCCa -3'
miRNA:   3'- cGCUCGUCGUaCAaUUGGauguAGGG- -5'
10554 3' -48.7 NC_002687.1 + 282188 0.67 0.999939
Target:  5'- gGCG-GCGGCuguUGUUuccccaaGACCUGCGUUUUg -3'
miRNA:   3'- -CGCuCGUCGu--ACAA-------UUGGAUGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.