miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10554 3' -48.7 NC_002687.1 + 257054 1.16 0.012492
Target:  5'- cGCGAGCAGCAUGUUAACCUACAUCCCu -3'
miRNA:   3'- -CGCUCGUCGUACAAUUGGAUGUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 35788 0.66 0.999974
Target:  5'- aGCGAgGCAaaGUGUagcuUAGCgUACAUCCg -3'
miRNA:   3'- -CGCU-CGUcgUACA----AUUGgAUGUAGGg -5'
10554 3' -48.7 NC_002687.1 + 305861 0.66 0.999974
Target:  5'- uGUG-GCAGCAUGUUGGCUcacCGUgUCa -3'
miRNA:   3'- -CGCuCGUCGUACAAUUGGau-GUAgGG- -5'
10554 3' -48.7 NC_002687.1 + 234218 0.66 0.99999
Target:  5'- cGCGAGCucgaccagagaaAGCGUG---ACCaGCAggCCCg -3'
miRNA:   3'- -CGCUCG------------UCGUACaauUGGaUGUa-GGG- -5'
10554 3' -48.7 NC_002687.1 + 17512 0.72 0.993189
Target:  5'- aGCaGAGCGGCAUGgugGAUgUACAcUCCa -3'
miRNA:   3'- -CG-CUCGUCGUACaa-UUGgAUGUaGGG- -5'
10554 3' -48.7 NC_002687.1 + 13576 0.71 0.996766
Target:  5'- uCGAGCGGCAUGUguuuAUUU-CGUUCCa -3'
miRNA:   3'- cGCUCGUCGUACAau--UGGAuGUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 25282 0.7 0.998859
Target:  5'- aCGAGUguucuGCcgGUggagaGACCUACAUCCa -3'
miRNA:   3'- cGCUCGu----CGuaCAa----UUGGAUGUAGGg -5'
10554 3' -48.7 NC_002687.1 + 7284 0.69 0.999486
Target:  5'- cGCGcGCGGCGUGcaGAUCguuuucgGCAUCCg -3'
miRNA:   3'- -CGCuCGUCGUACaaUUGGa------UGUAGGg -5'
10554 3' -48.7 NC_002687.1 + 39068 0.67 0.999922
Target:  5'- cGCGAGCugcugaAGCAUGgc-GCCgACAUCg- -3'
miRNA:   3'- -CGCUCG------UCGUACaauUGGaUGUAGgg -5'
10554 3' -48.7 NC_002687.1 + 181791 0.67 0.999955
Target:  5'- --uGGCGGCAcg--GACCUuCAUCCCc -3'
miRNA:   3'- cgcUCGUCGUacaaUUGGAuGUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 253279 0.67 0.999941
Target:  5'- aCGAGCAGCGcGUcGACCggu-UUCCa -3'
miRNA:   3'- cGCUCGUCGUaCAaUUGGauguAGGG- -5'
10554 3' -48.7 NC_002687.1 + 290641 0.67 0.999922
Target:  5'- uGCuGGGCGGCAUG---GCC-AUcgCCCa -3'
miRNA:   3'- -CG-CUCGUCGUACaauUGGaUGuaGGG- -5'
10554 3' -48.7 NC_002687.1 + 251242 0.79 0.863502
Target:  5'- uGCGGGCAGCAUG---ACCgagacgauCGUCCCu -3'
miRNA:   3'- -CGCUCGUCGUACaauUGGau------GUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 328779 0.67 0.999941
Target:  5'- gGCGaAGCAGC-UGgu-GCCaGCAUgCCu -3'
miRNA:   3'- -CGC-UCGUCGuACaauUGGaUGUAgGG- -5'
10554 3' -48.7 NC_002687.1 + 21850 0.76 0.947147
Target:  5'- cGCuGGCGGCggGggAACCUguggACAUCCCc -3'
miRNA:   3'- -CGcUCGUCGuaCaaUUGGA----UGUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 124950 0.68 0.999585
Target:  5'- aGCcAGCAGUGUGUUGGag-ACGUCCa -3'
miRNA:   3'- -CGcUCGUCGUACAAUUggaUGUAGGg -5'
10554 3' -48.7 NC_002687.1 + 105308 0.67 0.999944
Target:  5'- gGUGGGCGGCAauggacgacgacugGUUGcagagacGCCUGCGaugaggaUCCCa -3'
miRNA:   3'- -CGCUCGUCGUa-------------CAAU-------UGGAUGU-------AGGG- -5'
10554 3' -48.7 NC_002687.1 + 8981 0.66 0.999974
Target:  5'- uGCGGcccauCAGCGUgGUUGACuCUGCGaauaacUCCCg -3'
miRNA:   3'- -CGCUc----GUCGUA-CAAUUG-GAUGU------AGGG- -5'
10554 3' -48.7 NC_002687.1 + 296003 0.74 0.974612
Target:  5'- aCGuGCAGaccaAUGUUAACCUG-AUCCCu -3'
miRNA:   3'- cGCuCGUCg---UACAAUUGGAUgUAGGG- -5'
10554 3' -48.7 NC_002687.1 + 279269 0.7 0.998626
Target:  5'- aCGAGCAGCAgGUgguGCCgGCAccaccggCCCa -3'
miRNA:   3'- cGCUCGUCGUaCAau-UGGaUGUa------GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.