miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10555 3' -52.2 NC_002687.1 + 217469 0.66 0.99941
Target:  5'- gGACUC-GUGGGAgcacucguggGAGCCGGagcaCUCGUg -3'
miRNA:   3'- gCUGGGaCACCUU----------UUUGGCUg---GAGCG- -5'
10555 3' -52.2 NC_002687.1 + 216790 0.66 0.99941
Target:  5'- gGGCCCUGUGuGAcuuacAGACgGAuacUCUUGCg -3'
miRNA:   3'- gCUGGGACAC-CUu----UUUGgCU---GGAGCG- -5'
10555 3' -52.2 NC_002687.1 + 196077 0.66 0.999268
Target:  5'- aGACCCUGguacAGAcaccaacaucaucAUCGACUUCGCa -3'
miRNA:   3'- gCUGGGACaccuUUU-------------UGGCUGGAGCG- -5'
10555 3' -52.2 NC_002687.1 + 221669 0.66 0.999268
Target:  5'- aGACCCUGguacAGAcaccaacaucaucAUCGACUUCGCa -3'
miRNA:   3'- gCUGGGACaccuUUU-------------UGGCUGGAGCG- -5'
10555 3' -52.2 NC_002687.1 + 85770 0.66 0.999239
Target:  5'- gGGCCCUGagcaccggcgcccuUGGAuuuGCCGuCCccCGCg -3'
miRNA:   3'- gCUGGGAC--------------ACCUuuuUGGCuGGa-GCG- -5'
10555 3' -52.2 NC_002687.1 + 277060 0.66 0.999131
Target:  5'- aCGGCagguaUUGUGGAAAGACgGAUggUGCa -3'
miRNA:   3'- -GCUGg----GACACCUUUUUGgCUGgaGCG- -5'
10555 3' -52.2 NC_002687.1 + 20242 0.66 0.999131
Target:  5'- aGACCCUGguacAGAcacaacaucaucAUCGACUUCGCa -3'
miRNA:   3'- gCUGGGACaccuUUU------------UGGCUGGAGCG- -5'
10555 3' -52.2 NC_002687.1 + 159128 0.66 0.999131
Target:  5'- gCGACUa-GUGuugc-ACCGGCCUCGCc -3'
miRNA:   3'- -GCUGGgaCACcuuuuUGGCUGGAGCG- -5'
10555 3' -52.2 NC_002687.1 + 320209 0.66 0.999045
Target:  5'- gGACCCUGggagGGAagagagaugugucGAAACCGGacuggucgaugaaCUCGUc -3'
miRNA:   3'- gCUGGGACa---CCU-------------UUUUGGCUg------------GAGCG- -5'
10555 3' -52.2 NC_002687.1 + 91426 0.66 0.999009
Target:  5'- aCGACCagguccaacuacagaUGGAAGucuCCGACCUCGa -3'
miRNA:   3'- -GCUGGgac------------ACCUUUuu-GGCUGGAGCg -5'
10555 3' -52.2 NC_002687.1 + 10864 0.66 0.998952
Target:  5'- gCGugCUUGUGGGuuaccaccCCGACUgacgCGCc -3'
miRNA:   3'- -GCugGGACACCUuuuu----GGCUGGa---GCG- -5'
10555 3' -52.2 NC_002687.1 + 203296 0.66 0.998952
Target:  5'- aCGACCCUGUacGAcAGAGCCccgucGAUCUcCGCg -3'
miRNA:   3'- -GCUGGGACAc-CU-UUUUGG-----CUGGA-GCG- -5'
10555 3' -52.2 NC_002687.1 + 243690 0.66 0.998744
Target:  5'- -aGCCUcGcGGcaccACCGACCUCGCa -3'
miRNA:   3'- gcUGGGaCaCCuuuuUGGCUGGAGCG- -5'
10555 3' -52.2 NC_002687.1 + 276026 0.66 0.998744
Target:  5'- aGAUCCaccgGGAGAAgaauacuccGCUGACCUCuGCa -3'
miRNA:   3'- gCUGGGaca-CCUUUU---------UGGCUGGAG-CG- -5'
10555 3' -52.2 NC_002687.1 + 139404 0.67 0.998501
Target:  5'- uCGACCCacUGUGGGu--AU--ACCUCGCc -3'
miRNA:   3'- -GCUGGG--ACACCUuuuUGgcUGGAGCG- -5'
10555 3' -52.2 NC_002687.1 + 206700 0.67 0.997895
Target:  5'- uCGuACCa-GUGGAAAAAUCaGCCUCGa -3'
miRNA:   3'- -GC-UGGgaCACCUUUUUGGcUGGAGCg -5'
10555 3' -52.2 NC_002687.1 + 243940 0.67 0.9974
Target:  5'- gGACCCUGUGaucggugucguaaauGAAGgCGGCCUCa- -3'
miRNA:   3'- gCUGGGACACcu-------------UUUUgGCUGGAGcg -5'
10555 3' -52.2 NC_002687.1 + 274540 0.67 0.997096
Target:  5'- aGACgCCUGUGGucauGAuacACCGaACCUCu- -3'
miRNA:   3'- gCUG-GGACACCu---UUu--UGGC-UGGAGcg -5'
10555 3' -52.2 NC_002687.1 + 28807 0.67 0.997096
Target:  5'- aGACCCaUGUGGAAcuGAGCUGcgaaUCGUa -3'
miRNA:   3'- gCUGGG-ACACCUU--UUUGGCugg-AGCG- -5'
10555 3' -52.2 NC_002687.1 + 265224 0.67 0.997096
Target:  5'- aCGACCUUGuUGGGAAAuucaGAgCUUGCu -3'
miRNA:   3'- -GCUGGGAC-ACCUUUUugg-CUgGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.