miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10557 3' -59.3 NC_002687.1 + 81671 0.66 0.944814
Target:  5'- uGGGUG-CGUCGGuUGUCAugGaACACGa -3'
miRNA:   3'- gCUCGCuGCGGCC-GCGGUugC-UGUGC- -5'
10557 3' -59.3 NC_002687.1 + 212687 0.66 0.944814
Target:  5'- gCGAGCccgaaGACGCCgaGGaUGCCAGCGAgcCGg -3'
miRNA:   3'- -GCUCG-----CUGCGG--CC-GCGGUUGCUguGC- -5'
10557 3' -59.3 NC_002687.1 + 227009 0.66 0.944814
Target:  5'- --cGcCGAUGCagGGCGCCAAUGcCACa -3'
miRNA:   3'- gcuC-GCUGCGg-CCGCGGUUGCuGUGc -5'
10557 3' -59.3 NC_002687.1 + 27182 0.66 0.944814
Target:  5'- uCGGGC-AUGUCGuCGCCccCGACACGg -3'
miRNA:   3'- -GCUCGcUGCGGCcGCGGuuGCUGUGC- -5'
10557 3' -59.3 NC_002687.1 + 154313 0.66 0.944405
Target:  5'- gCGAGCuGCGCaacugcgaccaagCGGuCGCCAAguucguggcCGACACGc -3'
miRNA:   3'- -GCUCGcUGCG-------------GCC-GCGGUU---------GCUGUGC- -5'
10557 3' -59.3 NC_002687.1 + 135634 0.66 0.940634
Target:  5'- aGAGUG-CuCUGGCGUaccGCGACGCGg -3'
miRNA:   3'- gCUCGCuGcGGCCGCGgu-UGCUGUGC- -5'
10557 3' -59.3 NC_002687.1 + 60697 0.66 0.940634
Target:  5'- gGAGCGGaaaGUucgugaauuuUGGCGUCGGCGACAa- -3'
miRNA:   3'- gCUCGCUg--CG----------GCCGCGGUUGCUGUgc -5'
10557 3' -59.3 NC_002687.1 + 145462 0.66 0.936255
Target:  5'- gGAGCuGAC-CCaGCGCCc-CGGCGCGc -3'
miRNA:   3'- gCUCG-CUGcGGcCGCGGuuGCUGUGC- -5'
10557 3' -59.3 NC_002687.1 + 224506 0.66 0.936255
Target:  5'- --cGCcaGCGCCaGCGCCAGCGcCACc -3'
miRNA:   3'- gcuCGc-UGCGGcCGCGGUUGCuGUGc -5'
10557 3' -59.3 NC_002687.1 + 87529 0.66 0.933531
Target:  5'- aCGAGUcggaaauccuccaagGGCGCCaagGGCGCCAAgGGCu-- -3'
miRNA:   3'- -GCUCG---------------CUGCGG---CCGCGGUUgCUGugc -5'
10557 3' -59.3 NC_002687.1 + 311440 0.66 0.931675
Target:  5'- -uGGCGGCGCUGGCGgCCGAUuuCAg- -3'
miRNA:   3'- gcUCGCUGCGGCCGC-GGUUGcuGUgc -5'
10557 3' -59.3 NC_002687.1 + 109198 0.66 0.931675
Target:  5'- aGcGCGACGCCGGCaCCAaaaugguuccuuACGAaACa -3'
miRNA:   3'- gCuCGCUGCGGCCGcGGU------------UGCUgUGc -5'
10557 3' -59.3 NC_002687.1 + 86087 0.66 0.931675
Target:  5'- -cAGCGGgGCCagcGGgGCCAGCGGgGCc -3'
miRNA:   3'- gcUCGCUgCGG---CCgCGGUUGCUgUGc -5'
10557 3' -59.3 NC_002687.1 + 102731 0.66 0.931675
Target:  5'- -cAGCGACaGCgaCGGCGaCAGCGACgGCGa -3'
miRNA:   3'- gcUCGCUG-CG--GCCGCgGUUGCUG-UGC- -5'
10557 3' -59.3 NC_002687.1 + 226222 0.66 0.926894
Target:  5'- gGGGUGGCGUgGGCGgCCGggACGAacagACGg -3'
miRNA:   3'- gCUCGCUGCGgCCGC-GGU--UGCUg---UGC- -5'
10557 3' -59.3 NC_002687.1 + 225664 0.66 0.926894
Target:  5'- gGGGUGGCGUgGGCGgCCGggACGAacagACGg -3'
miRNA:   3'- gCUCGCUGCGgCCGC-GGU--UGCUg---UGC- -5'
10557 3' -59.3 NC_002687.1 + 208785 0.66 0.921912
Target:  5'- aCGA-CGACGuuGGUGCCGagaACGACc-- -3'
miRNA:   3'- -GCUcGCUGCggCCGCGGU---UGCUGugc -5'
10557 3' -59.3 NC_002687.1 + 2395 0.66 0.921912
Target:  5'- -cAGCGACGaaCGuaGCgGACGACGCGu -3'
miRNA:   3'- gcUCGCUGCg-GCcgCGgUUGCUGUGC- -5'
10557 3' -59.3 NC_002687.1 + 56789 0.66 0.921912
Target:  5'- uGGGCGGgGUCGaaaaaauuGuCGCCGAgGGCACGg -3'
miRNA:   3'- gCUCGCUgCGGC--------C-GCGGUUgCUGUGC- -5'
10557 3' -59.3 NC_002687.1 + 118051 0.66 0.921912
Target:  5'- gGAGCuaccauCGggGGCGCCAAUGGCugGg -3'
miRNA:   3'- gCUCGcu----GCggCCGCGGUUGCUGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.