miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10557 5' -54.3 NC_002687.1 + 237987 0.66 0.991689
Target:  5'- uGGCACGaacuccagcuccaacCUcgCGAGGuuGGUGGCCGAg -3'
miRNA:   3'- -UCGUGC---------------GGuaGUUCCu-CUACCGGUUg -5'
10557 5' -54.3 NC_002687.1 + 225646 0.66 0.991248
Target:  5'- gAGCuggaGCCGgaCAGGGGGGUGGCg--- -3'
miRNA:   3'- -UCGug--CGGUa-GUUCCUCUACCGguug -5'
10557 5' -54.3 NC_002687.1 + 305291 0.66 0.990551
Target:  5'- gGGCucgguCGCCGUUggGGAGaAUcuucuucguguaggaGGUCGACa -3'
miRNA:   3'- -UCGu----GCGGUAGuuCCUC-UA---------------CCGGUUG- -5'
10557 5' -54.3 NC_002687.1 + 13360 0.66 0.990063
Target:  5'- uGCAUGCCAuUCAAGuGGGUGGUa--- -3'
miRNA:   3'- uCGUGCGGU-AGUUCcUCUACCGguug -5'
10557 5' -54.3 NC_002687.1 + 147533 0.66 0.988756
Target:  5'- aAGCACGCCGaggaacUCGcGGAugcuGAUG-CCGACg -3'
miRNA:   3'- -UCGUGCGGU------AGUuCCU----CUACcGGUUG- -5'
10557 5' -54.3 NC_002687.1 + 122724 0.66 0.988756
Target:  5'- gAGUAUGCCGagAAGGAGcacGGCUgcAACg -3'
miRNA:   3'- -UCGUGCGGUagUUCCUCua-CCGG--UUG- -5'
10557 5' -54.3 NC_002687.1 + 206455 0.66 0.988756
Target:  5'- -cCACGCCGUCGuAGGcGAUGGa-GACa -3'
miRNA:   3'- ucGUGCGGUAGU-UCCuCUACCggUUG- -5'
10557 5' -54.3 NC_002687.1 + 308786 0.66 0.988756
Target:  5'- gGGCGCGCCcgccccgcCGGGGucgccGGGUGGCUggUa -3'
miRNA:   3'- -UCGUGCGGua------GUUCC-----UCUACCGGuuG- -5'
10557 5' -54.3 NC_002687.1 + 223579 0.66 0.987319
Target:  5'- gGGCAgCGCgGUCccgggggaggGGGGuGGUGGCCGcaACa -3'
miRNA:   3'- -UCGU-GCGgUAG----------UUCCuCUACCGGU--UG- -5'
10557 5' -54.3 NC_002687.1 + 11149 0.66 0.987319
Target:  5'- gGGCGaGCCAagGAGGuuuUGGCCAAg -3'
miRNA:   3'- -UCGUgCGGUagUUCCucuACCGGUUg -5'
10557 5' -54.3 NC_002687.1 + 57234 0.66 0.987319
Target:  5'- gAGUACGCCGUUAAauGGAuuagGGUUAACa -3'
miRNA:   3'- -UCGUGCGGUAGUU--CCUcua-CCGGUUG- -5'
10557 5' -54.3 NC_002687.1 + 22155 0.66 0.985744
Target:  5'- cGGCgACGCCAugcccuguccUUGggagcguucaccAGGAGGUGGCgGACg -3'
miRNA:   3'- -UCG-UGCGGU----------AGU------------UCCUCUACCGgUUG- -5'
10557 5' -54.3 NC_002687.1 + 227001 0.66 0.985579
Target:  5'- cAGgGCGCCAaugccacagaaugUUggGGuGGguuugUGGCCAGCg -3'
miRNA:   3'- -UCgUGCGGU-------------AGuuCCuCU-----ACCGGUUG- -5'
10557 5' -54.3 NC_002687.1 + 171936 0.67 0.984024
Target:  5'- uGCACaugGCUuuGUCGAGGGGAUGGgUAGg -3'
miRNA:   3'- uCGUG---CGG--UAGUUCCUCUACCgGUUg -5'
10557 5' -54.3 NC_002687.1 + 297051 0.67 0.984024
Target:  5'- uGCGCGCCugcagaacacCGAGGAGGgcagGGCguACc -3'
miRNA:   3'- uCGUGCGGua--------GUUCCUCUa---CCGguUG- -5'
10557 5' -54.3 NC_002687.1 + 227476 0.67 0.984024
Target:  5'- aAGgAUGuCCGU--GGGAGGUGGCCGcucGCa -3'
miRNA:   3'- -UCgUGC-GGUAguUCCUCUACCGGU---UG- -5'
10557 5' -54.3 NC_002687.1 + 225860 0.67 0.982152
Target:  5'- gGGCG-GCCGggaCGAGGAGAcGGCUAcGCa -3'
miRNA:   3'- -UCGUgCGGUa--GUUCCUCUaCCGGU-UG- -5'
10557 5' -54.3 NC_002687.1 + 226046 0.67 0.982152
Target:  5'- gGGCG-GCCGggaCGAGGAGAcGGCUAcGCa -3'
miRNA:   3'- -UCGUgCGGUa--GUUCCUCUaCCGGU-UG- -5'
10557 5' -54.3 NC_002687.1 + 226418 0.67 0.982152
Target:  5'- gGGCG-GCCGggaCGAGGAGAcGGCUAcGCa -3'
miRNA:   3'- -UCGUgCGGUa--GUUCCUCUaCCGGU-UG- -5'
10557 5' -54.3 NC_002687.1 + 47596 0.67 0.982152
Target:  5'- uAGCACGCggaCGUCAacgguugcagAGGAGggGGagaaCAGCa -3'
miRNA:   3'- -UCGUGCG---GUAGU----------UCCUCuaCCg---GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.