miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10558 3' -48.7 NC_002687.1 + 96551 0.66 0.999991
Target:  5'- aGGCAUCGGCCuCGUUcuugACcgguAGGAaGCa -3'
miRNA:   3'- gCUGUAGUCGG-GCAG----UGuu--UUCUaCG- -5'
10558 3' -48.7 NC_002687.1 + 233617 0.66 0.999991
Target:  5'- gCGGCGU--GCCCaaaaagCGCAGAAGAUGg -3'
miRNA:   3'- -GCUGUAguCGGGca----GUGUUUUCUACg -5'
10558 3' -48.7 NC_002687.1 + 264642 0.66 0.999988
Target:  5'- aGACGUCGGCCaUGUCuCuu-GGA-GCg -3'
miRNA:   3'- gCUGUAGUCGG-GCAGuGuuuUCUaCG- -5'
10558 3' -48.7 NC_002687.1 + 63438 0.66 0.999988
Target:  5'- aCGACGUgugcuaccuggagUGGCUgGUUGCAAAAGGuUGCa -3'
miRNA:   3'- -GCUGUA-------------GUCGGgCAGUGUUUUCU-ACG- -5'
10558 3' -48.7 NC_002687.1 + 169076 0.66 0.999988
Target:  5'- gCGACAggUCGGCCC-UCACGAugaagucucucgGAGAccuUGUc -3'
miRNA:   3'- -GCUGU--AGUCGGGcAGUGUU------------UUCU---ACG- -5'
10558 3' -48.7 NC_002687.1 + 71381 0.66 0.999984
Target:  5'- uGACAU-GGCCCG-CAguGAGcGGUGCc -3'
miRNA:   3'- gCUGUAgUCGGGCaGUguUUU-CUACG- -5'
10558 3' -48.7 NC_002687.1 + 80616 0.66 0.999984
Target:  5'- aGugGaaGGCgugCCGUCACGGAAaauGAUGCg -3'
miRNA:   3'- gCugUagUCG---GGCAGUGUUUU---CUACG- -5'
10558 3' -48.7 NC_002687.1 + 191652 0.66 0.999984
Target:  5'- gGACGaCAGUCCGUC-CGAAcGA-GCu -3'
miRNA:   3'- gCUGUaGUCGGGCAGuGUUUuCUaCG- -5'
10558 3' -48.7 NC_002687.1 + 9926 0.66 0.999984
Target:  5'- -uACAUCGGCaaaaCGUCugGAcGGggGCc -3'
miRNA:   3'- gcUGUAGUCGg---GCAGugUUuUCuaCG- -5'
10558 3' -48.7 NC_002687.1 + 93526 0.66 0.999984
Target:  5'- aCGAUccaaacccaucaGUCAGUCUG-CACGAGguAGAUGUg -3'
miRNA:   3'- -GCUG------------UAGUCGGGCaGUGUUU--UCUACG- -5'
10558 3' -48.7 NC_002687.1 + 223988 0.66 0.999978
Target:  5'- uCGACGUCGaacGCUgG-CACAGAAGAacgugguguguUGCg -3'
miRNA:   3'- -GCUGUAGU---CGGgCaGUGUUUUCU-----------ACG- -5'
10558 3' -48.7 NC_002687.1 + 290910 0.66 0.999971
Target:  5'- uCGGCAgugCAGUCgGcCACGAGAGAg-- -3'
miRNA:   3'- -GCUGUa--GUCGGgCaGUGUUUUCUacg -5'
10558 3' -48.7 NC_002687.1 + 320539 0.66 0.999971
Target:  5'- uCGACuccaAGaaaCCGUCACGAGAGAaauggagguaucUGCc -3'
miRNA:   3'- -GCUGuag-UCg--GGCAGUGUUUUCU------------ACG- -5'
10558 3' -48.7 NC_002687.1 + 73590 0.66 0.99997
Target:  5'- cCGACGUUAGCgagCCGagCAUAAacaugguGAGGUGCc -3'
miRNA:   3'- -GCUGUAGUCG---GGCa-GUGUU-------UUCUACG- -5'
10558 3' -48.7 NC_002687.1 + 252893 0.67 0.999961
Target:  5'- aCGACAUCccuGCCUucuUCGCGGAAaAUGCc -3'
miRNA:   3'- -GCUGUAGu--CGGGc--AGUGUUUUcUACG- -5'
10558 3' -48.7 NC_002687.1 + 312114 0.67 0.99996
Target:  5'- uGACA-CAGCCgcgugugCGUCACAGcAGcUGCc -3'
miRNA:   3'- gCUGUaGUCGG-------GCAGUGUUuUCuACG- -5'
10558 3' -48.7 NC_002687.1 + 111438 0.67 0.999949
Target:  5'- aGGCAagUCuGCCUGcaCGCGAucGGUGCa -3'
miRNA:   3'- gCUGU--AGuCGGGCa-GUGUUuuCUACG- -5'
10558 3' -48.7 NC_002687.1 + 71709 0.67 0.999949
Target:  5'- uCGACAUCGGCCgUGgaacCACGGAcacuaggccGGggGCg -3'
miRNA:   3'- -GCUGUAGUCGG-GCa---GUGUUU---------UCuaCG- -5'
10558 3' -48.7 NC_002687.1 + 111048 0.67 0.999933
Target:  5'- --uCAUaCAGUcuaCCGUCGCAGucGGAUGCa -3'
miRNA:   3'- gcuGUA-GUCG---GGCAGUGUUu-UCUACG- -5'
10558 3' -48.7 NC_002687.1 + 128459 0.67 0.999933
Target:  5'- aGGCggCGGCacaaCUGUCuCGAAAGAUGUg -3'
miRNA:   3'- gCUGuaGUCG----GGCAGuGUUUUCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.