miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10558 3' -48.7 NC_002687.1 + 263277 1.14 0.015685
Target:  5'- cCGACAUCAGCCCGUCACAAAAGAUGCg -3'
miRNA:   3'- -GCUGUAGUCGGGCAGUGUUUUCUACG- -5'
10558 3' -48.7 NC_002687.1 + 110934 0.81 0.78545
Target:  5'- uCGACGUCAGCCUGUCuCAcuGcGGUGCu -3'
miRNA:   3'- -GCUGUAGUCGGGCAGuGUuuU-CUACG- -5'
10558 3' -48.7 NC_002687.1 + 84502 0.8 0.803491
Target:  5'- uGGCAUCA-CCCGUCAaGAGAGAUGUu -3'
miRNA:   3'- gCUGUAGUcGGGCAGUgUUUUCUACG- -5'
10558 3' -48.7 NC_002687.1 + 219726 0.79 0.868855
Target:  5'- gGAgGUCAGCgCGUUACGGAAGgcGCa -3'
miRNA:   3'- gCUgUAGUCGgGCAGUGUUUUCuaCG- -5'
10558 3' -48.7 NC_002687.1 + 192600 0.77 0.920847
Target:  5'- gGACAaCAGUCCGUCGCAcGAGcUGUg -3'
miRNA:   3'- gCUGUaGUCGGGCAGUGUuUUCuACG- -5'
10558 3' -48.7 NC_002687.1 + 219673 0.74 0.970944
Target:  5'- aCGuACAaCGGuCCUGcCACAGAAGAUGCu -3'
miRNA:   3'- -GC-UGUaGUC-GGGCaGUGUUUUCUACG- -5'
10558 3' -48.7 NC_002687.1 + 116517 0.74 0.973698
Target:  5'- gGACAUCAucauGCCCGUCAUgucuGGAGucacGUGCg -3'
miRNA:   3'- gCUGUAGU----CGGGCAGUGu---UUUC----UACG- -5'
10558 3' -48.7 NC_002687.1 + 57108 0.73 0.986393
Target:  5'- cCGACGcUAGaCCCGUCAac-GGGAUGCu -3'
miRNA:   3'- -GCUGUaGUC-GGGCAGUguuUUCUACG- -5'
10558 3' -48.7 NC_002687.1 + 213599 0.73 0.987794
Target:  5'- gGACAUCAGCaagGUCACGGAgaucgagcuguacGGGUGUg -3'
miRNA:   3'- gCUGUAGUCGgg-CAGUGUUU-------------UCUACG- -5'
10558 3' -48.7 NC_002687.1 + 30835 0.73 0.989352
Target:  5'- -uACAUCGGCCCGUCGCAcaaccucAGAcccgugGCg -3'
miRNA:   3'- gcUGUAGUCGGGCAGUGUuu-----UCUa-----CG- -5'
10558 3' -48.7 NC_002687.1 + 309964 0.72 0.990629
Target:  5'- aGAag-CAGCCUGUCGCGGAGGccaGCa -3'
miRNA:   3'- gCUguaGUCGGGCAGUGUUUUCua-CG- -5'
10558 3' -48.7 NC_002687.1 + 309159 0.72 0.993752
Target:  5'- aCGACccUgAGCCCGUC-CAuaucGAGGUGCu -3'
miRNA:   3'- -GCUGu-AgUCGGGCAGuGUu---UUCUACG- -5'
10558 3' -48.7 NC_002687.1 + 170153 0.72 0.993752
Target:  5'- uCGGCGUCGGCCaCGaCACGGuGGAccugGCg -3'
miRNA:   3'- -GCUGUAGUCGG-GCaGUGUUuUCUa---CG- -5'
10558 3' -48.7 NC_002687.1 + 108282 0.72 0.994584
Target:  5'- aGGCucgcUCcuuGUCgGUCACGGGAGAUGCg -3'
miRNA:   3'- gCUGu---AGu--CGGgCAGUGUUUUCUACG- -5'
10558 3' -48.7 NC_002687.1 + 71541 0.71 0.995253
Target:  5'- aGACGUCuGaCCCGUC-CAGAuucaugcGGAUGUa -3'
miRNA:   3'- gCUGUAGuC-GGGCAGuGUUU-------UCUACG- -5'
10558 3' -48.7 NC_002687.1 + 329800 0.71 0.995726
Target:  5'- gCGGCAUCuuggcgaaaGGUCUGggggggaaauucgCGCAGAAGAUGCg -3'
miRNA:   3'- -GCUGUAG---------UCGGGCa------------GUGUUUUCUACG- -5'
10558 3' -48.7 NC_002687.1 + 24365 0.71 0.995979
Target:  5'- uGACAUCGG-UCGUCACA-AGGAcgGCg -3'
miRNA:   3'- gCUGUAGUCgGGCAGUGUuUUCUa-CG- -5'
10558 3' -48.7 NC_002687.1 + 55386 0.71 0.995979
Target:  5'- aCGACGggcuuGCCCGUCAUAgccguguaggauAGGGGUGUg -3'
miRNA:   3'- -GCUGUagu--CGGGCAGUGU------------UUUCUACG- -5'
10558 3' -48.7 NC_002687.1 + 125143 0.71 0.996557
Target:  5'- uCGGCAUCGGCCuCGgcaUCGCAugcguGGUGUu -3'
miRNA:   3'- -GCUGUAGUCGG-GC---AGUGUuuu--CUACG- -5'
10558 3' -48.7 NC_002687.1 + 160880 0.71 0.996557
Target:  5'- uCGGCuUCGGCCacggugacaaccUGUCACAu-GGGUGCa -3'
miRNA:   3'- -GCUGuAGUCGG------------GCAGUGUuuUCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.