miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10558 5' -49.9 NC_002687.1 + 209693 0.66 0.999924
Target:  5'- uGGAGcCCGUCaacaGGAAacggaAUCgGUGGGCUg -3'
miRNA:   3'- -UCUCuGGUAGa---CCUU-----UAGgUACUCGG- -5'
10558 5' -49.9 NC_002687.1 + 330788 0.66 0.999924
Target:  5'- cGGGGACCGgacgcggcagUUGGGGAggCAUG-GCCa -3'
miRNA:   3'- -UCUCUGGUa---------GACCUUUagGUACuCGG- -5'
10558 5' -49.9 NC_002687.1 + 203699 0.66 0.999902
Target:  5'- cGGGGCCAgcacGGAAucAUCCGUG-GUCg -3'
miRNA:   3'- uCUCUGGUaga-CCUU--UAGGUACuCGG- -5'
10558 5' -49.9 NC_002687.1 + 86093 0.66 0.999874
Target:  5'- cGAGGCCAgcgGGg---CCAgcgGGGCCa -3'
miRNA:   3'- uCUCUGGUagaCCuuuaGGUa--CUCGG- -5'
10558 5' -49.9 NC_002687.1 + 127431 0.66 0.999874
Target:  5'- ---aACCA-CUGGAAAUCCGUcAGCa -3'
miRNA:   3'- ucucUGGUaGACCUUUAGGUAcUCGg -5'
10558 5' -49.9 NC_002687.1 + 135514 0.66 0.999874
Target:  5'- uAGGGucucgcccgucACCAuacUCUGGAAGUCCGccUGAuCCa -3'
miRNA:   3'- -UCUC-----------UGGU---AGACCUUUAGGU--ACUcGG- -5'
10558 5' -49.9 NC_002687.1 + 139908 0.66 0.999839
Target:  5'- -aGGACCAcaUCUGGAug-CC-UGuGCCu -3'
miRNA:   3'- ucUCUGGU--AGACCUuuaGGuACuCGG- -5'
10558 5' -49.9 NC_002687.1 + 226561 0.66 0.999839
Target:  5'- uGGGACCG-CUGGGA--CCgAUGGGaCCg -3'
miRNA:   3'- uCUCUGGUaGACCUUuaGG-UACUC-GG- -5'
10558 5' -49.9 NC_002687.1 + 118052 0.66 0.999839
Target:  5'- gGGAGcuACCAUCgGGGGcgCCAauGGCUg -3'
miRNA:   3'- -UCUC--UGGUAGaCCUUuaGGUacUCGG- -5'
10558 5' -49.9 NC_002687.1 + 64084 0.66 0.999814
Target:  5'- gAGcGACCGUCgaagaccgcgaaacgUGGAGAgCCGUGcuGCCg -3'
miRNA:   3'- -UCuCUGGUAG---------------ACCUUUaGGUACu-CGG- -5'
10558 5' -49.9 NC_002687.1 + 6368 0.66 0.999795
Target:  5'- -cAGACCG-CUGcGAGA--CAUGAGCCu -3'
miRNA:   3'- ucUCUGGUaGAC-CUUUagGUACUCGG- -5'
10558 5' -49.9 NC_002687.1 + 117466 0.66 0.999795
Target:  5'- cGAGACgGgagaGGAGGUCUAUG-GCCc -3'
miRNA:   3'- uCUCUGgUaga-CCUUUAGGUACuCGG- -5'
10558 5' -49.9 NC_002687.1 + 180412 0.66 0.999795
Target:  5'- gGGAGAUCAUC-GGugGUuuG-GAGCCa -3'
miRNA:   3'- -UCUCUGGUAGaCCuuUAggUaCUCGG- -5'
10558 5' -49.9 NC_002687.1 + 74564 0.67 0.999742
Target:  5'- cAGAGaaGCCAUCUGGAAcuacAUCCA---GCa -3'
miRNA:   3'- -UCUC--UGGUAGACCUU----UAGGUacuCGg -5'
10558 5' -49.9 NC_002687.1 + 66058 0.67 0.999742
Target:  5'- aGGAGGCCuuUCaaGuuAUCCAUG-GCCu -3'
miRNA:   3'- -UCUCUGGu-AGacCuuUAGGUACuCGG- -5'
10558 5' -49.9 NC_002687.1 + 307595 0.67 0.999724
Target:  5'- uGGAGGCCGgaccUCUGGGAagaaaacggcgaggGUaaauaagcCCGUGGGUCa -3'
miRNA:   3'- -UCUCUGGU----AGACCUU--------------UA--------GGUACUCGG- -5'
10558 5' -49.9 NC_002687.1 + 186954 0.67 0.999677
Target:  5'- gGGGGugUGUCUGGAAcuGUCCuuAUG-GCg -3'
miRNA:   3'- -UCUCugGUAGACCUU--UAGG--UACuCGg -5'
10558 5' -49.9 NC_002687.1 + 186717 0.67 0.999677
Target:  5'- gGGGGugUGUCUGGAAcuGUCCuuAUG-GCg -3'
miRNA:   3'- -UCUCugGUAGACCUU--UAGG--UACuCGg -5'
10558 5' -49.9 NC_002687.1 + 187664 0.67 0.999677
Target:  5'- gGGGGugUGUCUGGAAcuGUCCuuAUG-GCg -3'
miRNA:   3'- -UCUCugGUAGACCUU--UAGG--UACuCGg -5'
10558 5' -49.9 NC_002687.1 + 185534 0.67 0.999677
Target:  5'- gGGGGugUGUCUGGAAcuGUCCuuAUG-GCg -3'
miRNA:   3'- -UCUCugGUAGACCUU--UAGG--UACuCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.