miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10559 3' -57.3 NC_002687.1 + 44486 0.66 0.957294
Target:  5'- aUGGAuGCGG-CCGGuGCauACUUCUUGAGCg -3'
miRNA:   3'- -ACUU-CGCCcGGUU-CG--UGGAGGACUCG- -5'
10559 3' -57.3 NC_002687.1 + 210685 0.66 0.957294
Target:  5'- aGAAGCGGG-CGAGCGCCagaaCgcaGAGg -3'
miRNA:   3'- aCUUCGCCCgGUUCGUGGag--Ga--CUCg -5'
10559 3' -57.3 NC_002687.1 + 309085 0.66 0.957294
Target:  5'- cGAGGgGGGCaucuuuguCAGGaUACUUCCcGGGCa -3'
miRNA:   3'- aCUUCgCCCG--------GUUC-GUGGAGGaCUCG- -5'
10559 3' -57.3 NC_002687.1 + 332032 0.66 0.957294
Target:  5'- uUGcAGGCuGGCCAuGCGCCgCCUuGAGg -3'
miRNA:   3'- -AC-UUCGcCCGGUuCGUGGaGGA-CUCg -5'
10559 3' -57.3 NC_002687.1 + 32415 0.66 0.957294
Target:  5'- aGggGCGGGUCAAGagguaUUCaauuUGGGCa -3'
miRNA:   3'- aCuuCGCCCGGUUCgug--GAGg---ACUCG- -5'
10559 3' -57.3 NC_002687.1 + 117833 0.66 0.951329
Target:  5'- gGAGGgGGGCCAuAG-ACCUCCUcucccgucucgugauGAGg -3'
miRNA:   3'- aCUUCgCCCGGU-UCgUGGAGGA---------------CUCg -5'
10559 3' -57.3 NC_002687.1 + 40343 0.66 0.949754
Target:  5'- cGcAAGuCGuGGCCAAcuCAUCUCCUGAGa -3'
miRNA:   3'- aC-UUC-GC-CCGGUUc-GUGGAGGACUCg -5'
10559 3' -57.3 NC_002687.1 + 246978 0.66 0.949754
Target:  5'- cGcAAGuCGuGGCCAAcuCAUCUCCUGAGa -3'
miRNA:   3'- aC-UUC-GC-CCGGUUc-GUGGAGGACUCg -5'
10559 3' -57.3 NC_002687.1 + 169239 0.66 0.949754
Target:  5'- ---uGCGGGCCAcguGCucUCUCCUGuGUu -3'
miRNA:   3'- acuuCGCCCGGUu--CGu-GGAGGACuCG- -5'
10559 3' -57.3 NC_002687.1 + 318937 0.66 0.949754
Target:  5'- cGcAAGuCGuGGCCAAcuCAUCUCCUGAGa -3'
miRNA:   3'- aC-UUC-GC-CCGGUUc-GUGGAGGACUCg -5'
10559 3' -57.3 NC_002687.1 + 241609 0.66 0.945672
Target:  5'- cGGAGCaGGCCAagaAGUACgaUCCuagguUGGGCa -3'
miRNA:   3'- aCUUCGcCCGGU---UCGUGg-AGG-----ACUCG- -5'
10559 3' -57.3 NC_002687.1 + 216063 0.67 0.941377
Target:  5'- aUGGA-CGGGCCu-GCGCCgauguucagCCgcugGAGCa -3'
miRNA:   3'- -ACUUcGCCCGGuuCGUGGa--------GGa---CUCG- -5'
10559 3' -57.3 NC_002687.1 + 169617 0.67 0.936868
Target:  5'- gGAAGCcgGGGCCGGauaccugugccGCcgaACCUCCUcAGCu -3'
miRNA:   3'- aCUUCG--CCCGGUU-----------CG---UGGAGGAcUCG- -5'
10559 3' -57.3 NC_002687.1 + 275956 0.67 0.932144
Target:  5'- aUGAGcGCGGcGCaaaGAGC-CagUCCUGAGCu -3'
miRNA:   3'- -ACUU-CGCC-CGg--UUCGuGg-AGGACUCG- -5'
10559 3' -57.3 NC_002687.1 + 153411 0.67 0.932144
Target:  5'- cGAuaaGGCGGGCCAAGCuaaaCUC---GGCa -3'
miRNA:   3'- aCU---UCGCCCGGUUCGug--GAGgacUCG- -5'
10559 3' -57.3 NC_002687.1 + 279640 0.67 0.927204
Target:  5'- --uGGUGGGCCGguggugccGGCACCaCCUGcuGCu -3'
miRNA:   3'- acuUCGCCCGGU--------UCGUGGaGGACu-CG- -5'
10559 3' -57.3 NC_002687.1 + 27857 0.67 0.922048
Target:  5'- aGggGgGGGggAGGCGCCUUUcGGGCg -3'
miRNA:   3'- aCuuCgCCCggUUCGUGGAGGaCUCG- -5'
10559 3' -57.3 NC_002687.1 + 35825 0.68 0.911087
Target:  5'- gUGAGGCaGGGgCGGGCAUCUgCCgauGCg -3'
miRNA:   3'- -ACUUCG-CCCgGUUCGUGGA-GGacuCG- -5'
10559 3' -57.3 NC_002687.1 + 281804 0.68 0.908792
Target:  5'- gGggGCagGGGCCGgggcgccagaAGUGCCgauggcaggagaaCCUGAGCa -3'
miRNA:   3'- aCuuCG--CCCGGU----------UCGUGGa------------GGACUCG- -5'
10559 3' -57.3 NC_002687.1 + 299828 0.68 0.905285
Target:  5'- aGGAGuCGGGCCAuGCG-CUCgaGGGUu -3'
miRNA:   3'- aCUUC-GCCCGGUuCGUgGAGgaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.