Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10559 | 3' | -57.3 | NC_002687.1 | + | 270269 | 1.12 | 0.002832 |
Target: 5'- uUGAAGCGGGCCAAGCACCUCCUGAGCa -3' miRNA: 3'- -ACUUCGCCCGGUUCGUGGAGGACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 268247 | 1.12 | 0.002832 |
Target: 5'- uUGAAGCGGGCCAAGCACCUCCUGAGCa -3' miRNA: 3'- -ACUUCGCCCGGUUCGUGGAGGACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 141338 | 0.79 | 0.336909 |
Target: 5'- gGAAGU-GGUCAAGUACCUCCUGGGg -3' miRNA: 3'- aCUUCGcCCGGUUCGUGGAGGACUCg -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 159716 | 0.78 | 0.398141 |
Target: 5'- cUGGAGaGGGCCGAGCACagcgCCUGcAGCu -3' miRNA: 3'- -ACUUCgCCCGGUUCGUGga--GGAC-UCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 320712 | 0.75 | 0.558512 |
Target: 5'- -cGAGCaGGGCCu-GCaACCUCCUGAGg -3' miRNA: 3'- acUUCG-CCCGGuuCG-UGGAGGACUCg -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 297326 | 0.75 | 0.558512 |
Target: 5'- -cGAGCaGGGCUGAcaACCUCCUGGGCg -3' miRNA: 3'- acUUCG-CCCGGUUcgUGGAGGACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 245203 | 0.75 | 0.558512 |
Target: 5'- -cGAGCaGGGCCu-GCaACCUCCUGAGg -3' miRNA: 3'- acUUCG-CCCGGuuCG-UGGAGGACUCg -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 303848 | 0.73 | 0.655392 |
Target: 5'- aUGAcagcAGCGGGCCuAGC-CC-CCgGAGCa -3' miRNA: 3'- -ACU----UCGCCCGGuUCGuGGaGGaCUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 42767 | 0.73 | 0.674783 |
Target: 5'- cGAccuGGuCGGGUUAAGUAUCUCCgGGGCa -3' miRNA: 3'- aCU---UC-GCCCGGUUCGUGGAGGaCUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 301580 | 0.71 | 0.774852 |
Target: 5'- cUGcAAGCGGG-CGAGCACuCUCUguuugacuguucugUGAGCa -3' miRNA: 3'- -AC-UUCGCCCgGUUCGUG-GAGG--------------ACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 214915 | 0.7 | 0.819315 |
Target: 5'- uUGAGGUGuGGCCAAGguCCgccgccgccucuuUCCUGuacGGCg -3' miRNA: 3'- -ACUUCGC-CCGGUUCguGG-------------AGGAC---UCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 37975 | 0.69 | 0.843908 |
Target: 5'- -aGAGUGGaggagagaacaGCCGAGCACCUCgaaaGAGCa -3' miRNA: 3'- acUUCGCC-----------CGGUUCGUGGAGga--CUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 207098 | 0.69 | 0.843908 |
Target: 5'- ---uGCGGGUacAGCACCUCCacAGCa -3' miRNA: 3'- acuuCGCCCGguUCGUGGAGGacUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 285104 | 0.68 | 0.885962 |
Target: 5'- uUGggGCGGGCgAuuuuGGCcggaaacACCauguaCCUGGGCa -3' miRNA: 3'- -ACuuCGCCCGgU----UCG-------UGGa----GGACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 107341 | 0.68 | 0.899271 |
Target: 5'- gGAcaAGCGaGGCCGcaugggcaaugGGguCCUCgUGGGCg -3' miRNA: 3'- aCU--UCGC-CCGGU-----------UCguGGAGgACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 201193 | 0.68 | 0.899271 |
Target: 5'- aGAAGCaGauGCCGAGCcugaccgacaACCUCCUuGGCg -3' miRNA: 3'- aCUUCGcC--CGGUUCG----------UGGAGGAcUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 182835 | 0.68 | 0.903503 |
Target: 5'- cGAAGCGcagcuggcgaaagcGGCCAAGUcguuCCUCCgaAGCg -3' miRNA: 3'- aCUUCGC--------------CCGGUUCGu---GGAGGacUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 299828 | 0.68 | 0.905285 |
Target: 5'- aGGAGuCGGGCCAuGCG-CUCgaGGGUu -3' miRNA: 3'- aCUUC-GCCCGGUuCGUgGAGgaCUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 281804 | 0.68 | 0.908792 |
Target: 5'- gGggGCagGGGCCGgggcgccagaAGUGCCgauggcaggagaaCCUGAGCa -3' miRNA: 3'- aCuuCG--CCCGGU----------UCGUGGa------------GGACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 35825 | 0.68 | 0.911087 |
Target: 5'- gUGAGGCaGGGgCGGGCAUCUgCCgauGCg -3' miRNA: 3'- -ACUUCG-CCCgGUUCGUGGA-GGacuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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