Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10559 | 3' | -57.3 | NC_002687.1 | + | 27857 | 0.67 | 0.922048 |
Target: 5'- aGggGgGGGggAGGCGCCUUUcGGGCg -3' miRNA: 3'- aCuuCgCCCggUUCGUGGAGGaCUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 32415 | 0.66 | 0.957294 |
Target: 5'- aGggGCGGGUCAAGagguaUUCaauuUGGGCa -3' miRNA: 3'- aCuuCGCCCGGUUCgug--GAGg---ACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 35825 | 0.68 | 0.911087 |
Target: 5'- gUGAGGCaGGGgCGGGCAUCUgCCgauGCg -3' miRNA: 3'- -ACUUCG-CCCgGUUCGUGGA-GGacuCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 37975 | 0.69 | 0.843908 |
Target: 5'- -aGAGUGGaggagagaacaGCCGAGCACCUCgaaaGAGCa -3' miRNA: 3'- acUUCGCC-----------CGGUUCGUGGAGga--CUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 40343 | 0.66 | 0.949754 |
Target: 5'- cGcAAGuCGuGGCCAAcuCAUCUCCUGAGa -3' miRNA: 3'- aC-UUC-GC-CCGGUUc-GUGGAGGACUCg -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 42767 | 0.73 | 0.674783 |
Target: 5'- cGAccuGGuCGGGUUAAGUAUCUCCgGGGCa -3' miRNA: 3'- aCU---UC-GCCCGGUUCGUGGAGGaCUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 44486 | 0.66 | 0.957294 |
Target: 5'- aUGGAuGCGG-CCGGuGCauACUUCUUGAGCg -3' miRNA: 3'- -ACUU-CGCCcGGUU-CG--UGGAGGACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 107341 | 0.68 | 0.899271 |
Target: 5'- gGAcaAGCGaGGCCGcaugggcaaugGGguCCUCgUGGGCg -3' miRNA: 3'- aCU--UCGC-CCGGU-----------UCguGGAGgACUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 117833 | 0.66 | 0.951329 |
Target: 5'- gGAGGgGGGCCAuAG-ACCUCCUcucccgucucgugauGAGg -3' miRNA: 3'- aCUUCgCCCGGU-UCgUGGAGGA---------------CUCg -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 141338 | 0.79 | 0.336909 |
Target: 5'- gGAAGU-GGUCAAGUACCUCCUGGGg -3' miRNA: 3'- aCUUCGcCCGGUUCGUGGAGGACUCg -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 153411 | 0.67 | 0.932144 |
Target: 5'- cGAuaaGGCGGGCCAAGCuaaaCUC---GGCa -3' miRNA: 3'- aCU---UCGCCCGGUUCGug--GAGgacUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 159716 | 0.78 | 0.398141 |
Target: 5'- cUGGAGaGGGCCGAGCACagcgCCUGcAGCu -3' miRNA: 3'- -ACUUCgCCCGGUUCGUGga--GGAC-UCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 169239 | 0.66 | 0.949754 |
Target: 5'- ---uGCGGGCCAcguGCucUCUCCUGuGUu -3' miRNA: 3'- acuuCGCCCGGUu--CGu-GGAGGACuCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 169617 | 0.67 | 0.936868 |
Target: 5'- gGAAGCcgGGGCCGGauaccugugccGCcgaACCUCCUcAGCu -3' miRNA: 3'- aCUUCG--CCCGGUU-----------CG---UGGAGGAcUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 182835 | 0.68 | 0.903503 |
Target: 5'- cGAAGCGcagcuggcgaaagcGGCCAAGUcguuCCUCCgaAGCg -3' miRNA: 3'- aCUUCGC--------------CCGGUUCGu---GGAGGacUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 201193 | 0.68 | 0.899271 |
Target: 5'- aGAAGCaGauGCCGAGCcugaccgacaACCUCCUuGGCg -3' miRNA: 3'- aCUUCGcC--CGGUUCG----------UGGAGGAcUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 207098 | 0.69 | 0.843908 |
Target: 5'- ---uGCGGGUacAGCACCUCCacAGCa -3' miRNA: 3'- acuuCGCCCGguUCGUGGAGGacUCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 210685 | 0.66 | 0.957294 |
Target: 5'- aGAAGCGGG-CGAGCGCCagaaCgcaGAGg -3' miRNA: 3'- aCUUCGCCCgGUUCGUGGag--Ga--CUCg -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 214915 | 0.7 | 0.819315 |
Target: 5'- uUGAGGUGuGGCCAAGguCCgccgccgccucuuUCCUGuacGGCg -3' miRNA: 3'- -ACUUCGC-CCGGUUCguGG-------------AGGAC---UCG- -5' |
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10559 | 3' | -57.3 | NC_002687.1 | + | 216063 | 0.67 | 0.941377 |
Target: 5'- aUGGA-CGGGCCu-GCGCCgauguucagCCgcugGAGCa -3' miRNA: 3'- -ACUUcGCCCGGuuCGUGGa--------GGa---CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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