miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10559 3' -57.3 NC_002687.1 + 141338 0.79 0.336909
Target:  5'- gGAAGU-GGUCAAGUACCUCCUGGGg -3'
miRNA:   3'- aCUUCGcCCGGUUCGUGGAGGACUCg -5'
10559 3' -57.3 NC_002687.1 + 40343 0.66 0.949754
Target:  5'- cGcAAGuCGuGGCCAAcuCAUCUCCUGAGa -3'
miRNA:   3'- aC-UUC-GC-CCGGUUc-GUGGAGGACUCg -5'
10559 3' -57.3 NC_002687.1 + 299828 0.68 0.905285
Target:  5'- aGGAGuCGGGCCAuGCG-CUCgaGGGUu -3'
miRNA:   3'- aCUUC-GCCCGGUuCGUgGAGgaCUCG- -5'
10559 3' -57.3 NC_002687.1 + 107341 0.68 0.899271
Target:  5'- gGAcaAGCGaGGCCGcaugggcaaugGGguCCUCgUGGGCg -3'
miRNA:   3'- aCU--UCGC-CCGGU-----------UCguGGAGgACUCG- -5'
10559 3' -57.3 NC_002687.1 + 37975 0.69 0.843908
Target:  5'- -aGAGUGGaggagagaacaGCCGAGCACCUCgaaaGAGCa -3'
miRNA:   3'- acUUCGCC-----------CGGUUCGUGGAGga--CUCG- -5'
10559 3' -57.3 NC_002687.1 + 301580 0.71 0.774852
Target:  5'- cUGcAAGCGGG-CGAGCACuCUCUguuugacuguucugUGAGCa -3'
miRNA:   3'- -AC-UUCGCCCgGUUCGUG-GAGG--------------ACUCG- -5'
10559 3' -57.3 NC_002687.1 + 32415 0.66 0.957294
Target:  5'- aGggGCGGGUCAAGagguaUUCaauuUGGGCa -3'
miRNA:   3'- aCuuCGCCCGGUUCgug--GAGg---ACUCG- -5'
10559 3' -57.3 NC_002687.1 + 246978 0.66 0.949754
Target:  5'- cGcAAGuCGuGGCCAAcuCAUCUCCUGAGa -3'
miRNA:   3'- aC-UUC-GC-CCGGUUc-GUGGAGGACUCg -5'
10559 3' -57.3 NC_002687.1 + 216063 0.67 0.941377
Target:  5'- aUGGA-CGGGCCu-GCGCCgauguucagCCgcugGAGCa -3'
miRNA:   3'- -ACUUcGCCCGGuuCGUGGa--------GGa---CUCG- -5'
10559 3' -57.3 NC_002687.1 + 285104 0.68 0.885962
Target:  5'- uUGggGCGGGCgAuuuuGGCcggaaacACCauguaCCUGGGCa -3'
miRNA:   3'- -ACuuCGCCCGgU----UCG-------UGGa----GGACUCG- -5'
10559 3' -57.3 NC_002687.1 + 245203 0.75 0.558512
Target:  5'- -cGAGCaGGGCCu-GCaACCUCCUGAGg -3'
miRNA:   3'- acUUCG-CCCGGuuCG-UGGAGGACUCg -5'
10559 3' -57.3 NC_002687.1 + 309085 0.66 0.957294
Target:  5'- cGAGGgGGGCaucuuuguCAGGaUACUUCCcGGGCa -3'
miRNA:   3'- aCUUCgCCCG--------GUUC-GUGGAGGaCUCG- -5'
10559 3' -57.3 NC_002687.1 + 297326 0.75 0.558512
Target:  5'- -cGAGCaGGGCUGAcaACCUCCUGGGCg -3'
miRNA:   3'- acUUCG-CCCGGUUcgUGGAGGACUCG- -5'
10559 3' -57.3 NC_002687.1 + 281804 0.68 0.908792
Target:  5'- gGggGCagGGGCCGgggcgccagaAGUGCCgauggcaggagaaCCUGAGCa -3'
miRNA:   3'- aCuuCG--CCCGGU----------UCGUGGa------------GGACUCG- -5'
10559 3' -57.3 NC_002687.1 + 332032 0.66 0.957294
Target:  5'- uUGcAGGCuGGCCAuGCGCCgCCUuGAGg -3'
miRNA:   3'- -AC-UUCGcCCGGUuCGUGGaGGA-CUCg -5'
10559 3' -57.3 NC_002687.1 + 303848 0.73 0.655392
Target:  5'- aUGAcagcAGCGGGCCuAGC-CC-CCgGAGCa -3'
miRNA:   3'- -ACU----UCGCCCGGuUCGuGGaGGaCUCG- -5'
10559 3' -57.3 NC_002687.1 + 270269 1.12 0.002832
Target:  5'- uUGAAGCGGGCCAAGCACCUCCUGAGCa -3'
miRNA:   3'- -ACUUCGCCCGGUUCGUGGAGGACUCG- -5'
10559 3' -57.3 NC_002687.1 + 207098 0.69 0.843908
Target:  5'- ---uGCGGGUacAGCACCUCCacAGCa -3'
miRNA:   3'- acuuCGCCCGguUCGUGGAGGacUCG- -5'
10559 3' -57.3 NC_002687.1 + 201193 0.68 0.899271
Target:  5'- aGAAGCaGauGCCGAGCcugaccgacaACCUCCUuGGCg -3'
miRNA:   3'- aCUUCGcC--CGGUUCG----------UGGAGGAcUCG- -5'
10559 3' -57.3 NC_002687.1 + 182835 0.68 0.903503
Target:  5'- cGAAGCGcagcuggcgaaagcGGCCAAGUcguuCCUCCgaAGCg -3'
miRNA:   3'- aCUUCGC--------------CCGGUUCGu---GGAGGacUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.