miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10559 5' -50.6 NC_002687.1 + 133586 0.66 0.999881
Target:  5'- cGCACGUCAAGca------GgGCGCGCu -3'
miRNA:   3'- -CGUGUAGUUCuugacaugCgCGCGCG- -5'
10559 5' -50.6 NC_002687.1 + 215453 0.66 0.999881
Target:  5'- -----gCGAGGGCgcgACGUGCGUGCa -3'
miRNA:   3'- cguguaGUUCUUGacaUGCGCGCGCG- -5'
10559 5' -50.6 NC_002687.1 + 170379 0.66 0.999881
Target:  5'- gGCACGaaccggggCAcGAACcg-GCGCGCGaCGCg -3'
miRNA:   3'- -CGUGUa-------GUuCUUGacaUGCGCGC-GCG- -5'
10559 5' -50.6 NC_002687.1 + 294048 0.66 0.999878
Target:  5'- gGUACAcgAAGAGCUG-ACGCacucgacGUGCGUa -3'
miRNA:   3'- -CGUGUagUUCUUGACaUGCG-------CGCGCG- -5'
10559 5' -50.6 NC_002687.1 + 69611 0.66 0.999848
Target:  5'- cGUACGcgaAAGcAACggaagACGUGCGCGCa -3'
miRNA:   3'- -CGUGUag-UUC-UUGaca--UGCGCGCGCG- -5'
10559 5' -50.6 NC_002687.1 + 208637 0.66 0.999848
Target:  5'- -gACGUCGAGGAC-GUugGUGC-CGa -3'
miRNA:   3'- cgUGUAGUUCUUGaCAugCGCGcGCg -5'
10559 5' -50.6 NC_002687.1 + 6326 0.66 0.999807
Target:  5'- gGC-CAUgGGGGuGCUGUGCGCGgGgGg -3'
miRNA:   3'- -CGuGUAgUUCU-UGACAUGCGCgCgCg -5'
10559 5' -50.6 NC_002687.1 + 295695 0.66 0.999807
Target:  5'- aCGCAcCAAGAAUgcUACGCaUGCGCu -3'
miRNA:   3'- cGUGUaGUUCUUGacAUGCGcGCGCG- -5'
10559 5' -50.6 NC_002687.1 + 4408 0.66 0.999807
Target:  5'- gGCAUcugCAAGcGCUcaaGUACGUGCGUGa -3'
miRNA:   3'- -CGUGua-GUUCuUGA---CAUGCGCGCGCg -5'
10559 5' -50.6 NC_002687.1 + 308553 0.66 0.999807
Target:  5'- aGCACGUC--GAACUGguucuCGCuCGUGUa -3'
miRNA:   3'- -CGUGUAGuuCUUGACau---GCGcGCGCG- -5'
10559 5' -50.6 NC_002687.1 + 303019 0.66 0.999802
Target:  5'- gGCACgguuuuuGUCGAGGcCUGUGCGaggGUGUGUc -3'
miRNA:   3'- -CGUG-------UAGUUCUuGACAUGCg--CGCGCG- -5'
10559 5' -50.6 NC_002687.1 + 264722 0.66 0.999802
Target:  5'- cGUugGUCAccugucgaucaauGGAaucacGCUGacACGCGUGUGCg -3'
miRNA:   3'- -CGugUAGU-------------UCU-----UGACa-UGCGCGCGCG- -5'
10559 5' -50.6 NC_002687.1 + 172941 0.66 0.999696
Target:  5'- gGCAC-UUGAGAcaaaGCUGgcCGCGUGUGa -3'
miRNA:   3'- -CGUGuAGUUCU----UGACauGCGCGCGCg -5'
10559 5' -50.6 NC_002687.1 + 61374 0.66 0.999696
Target:  5'- aGCugAUUgaaGAGcAGCUGaACGCGUGCa- -3'
miRNA:   3'- -CGugUAG---UUC-UUGACaUGCGCGCGcg -5'
10559 5' -50.6 NC_002687.1 + 252177 0.66 0.999653
Target:  5'- aGguUGUCGAGAGC-GUACugguugcagccagugGaCGCGCGCa -3'
miRNA:   3'- -CguGUAGUUCUUGaCAUG---------------C-GCGCGCG- -5'
10559 5' -50.6 NC_002687.1 + 95009 0.66 0.999621
Target:  5'- aCACAUCGGGAGaguUGCGCGgcacagacgugaUGCGCu -3'
miRNA:   3'- cGUGUAGUUCUUgacAUGCGC------------GCGCG- -5'
10559 5' -50.6 NC_002687.1 + 35973 0.66 0.999621
Target:  5'- gGC-CAUCGGGAuaccaaGCUGUGgaagcaauUGCGcCGCGUa -3'
miRNA:   3'- -CGuGUAGUUCU------UGACAU--------GCGC-GCGCG- -5'
10559 5' -50.6 NC_002687.1 + 115533 0.66 0.999621
Target:  5'- -gGCAUC-GGAGCUcugGCGUGCGuUGCg -3'
miRNA:   3'- cgUGUAGuUCUUGAca-UGCGCGC-GCG- -5'
10559 5' -50.6 NC_002687.1 + 60962 0.67 0.999532
Target:  5'- uGCGCAUCGuc--CUGUcUGCGCG-GCa -3'
miRNA:   3'- -CGUGUAGUucuuGACAuGCGCGCgCG- -5'
10559 5' -50.6 NC_002687.1 + 79246 0.67 0.999532
Target:  5'- aCACAUCGu--ACg--ACGUGCGCGUc -3'
miRNA:   3'- cGUGUAGUucuUGacaUGCGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.