miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1056 5' -46.8 NC_000929.1 + 18361 0.66 0.982006
Target:  5'- -aUCGGCGUUAaacCAgcc-AGCCGCg -3'
miRNA:   3'- ccAGUCGCAAUgcuGUauuuUCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 3741 0.66 0.979541
Target:  5'- -aUUGGUGcgGCGAUAUucacGGGCCGCu -3'
miRNA:   3'- ccAGUCGCaaUGCUGUAuu--UUCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 28129 0.66 0.973873
Target:  5'- uGGUcCAGCGUgaaGcCGggAAAAGCUGCc -3'
miRNA:   3'- -CCA-GUCGCAaugCuGUa-UUUUCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 30621 0.66 0.973873
Target:  5'- gGGUCAGUaugaccgGCGAUAUAAu--CCGCc -3'
miRNA:   3'- -CCAGUCGcaa----UGCUGUAUUuucGGCG- -5'
1056 5' -46.8 NC_000929.1 + 31179 0.66 0.982006
Target:  5'- aGUCGGCGcuuUUAUGAauggcuGGCUGCg -3'
miRNA:   3'- cCAGUCGC---AAUGCUguauuuUCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 25722 0.66 0.970646
Target:  5'- cGGUCGG-GUUGUGACAaAAGGuGCCGg -3'
miRNA:   3'- -CCAGUCgCAAUGCUGUaUUUU-CGGCg -5'
1056 5' -46.8 NC_000929.1 + 27036 0.67 0.963354
Target:  5'- cGGU-GGCGgcaugGCGACGUucgAAucGCUGCg -3'
miRNA:   3'- -CCAgUCGCaa---UGCUGUA---UUuuCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 17818 0.67 0.957987
Target:  5'- cGUCAGCGccgcucugagGCaauaaacagaaucaGGCAUAAAaucAGCCGCa -3'
miRNA:   3'- cCAGUCGCaa--------UG--------------CUGUAUUU---UCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 10624 0.67 0.963354
Target:  5'- cGGUCuGUGUgg-GACAUAccGGGCCGg -3'
miRNA:   3'- -CCAGuCGCAaugCUGUAUu-UUCGGCg -5'
1056 5' -46.8 NC_000929.1 + 9570 0.68 0.94518
Target:  5'- -uUCAGUGUUGCuuUAUGuguuGCCGCu -3'
miRNA:   3'- ccAGUCGCAAUGcuGUAUuuu-CGGCG- -5'
1056 5' -46.8 NC_000929.1 + 29247 0.68 0.934198
Target:  5'- aGGUCugGGCGUUAa-AgGUAAAAGCCa- -3'
miRNA:   3'- -CCAG--UCGCAAUgcUgUAUUUUCGGcg -5'
1056 5' -46.8 NC_000929.1 + 14123 0.68 0.934198
Target:  5'- cGGUaaCGGCgGUUAucUGGCA--GAGGCCGCc -3'
miRNA:   3'- -CCA--GUCG-CAAU--GCUGUauUUUCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 17278 0.68 0.947222
Target:  5'- uGGUCAGUaucaGCcGCGUAucugcacagucgcuuGAAGCCGCg -3'
miRNA:   3'- -CCAGUCGcaa-UGcUGUAU---------------UUUCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 22038 0.68 0.934198
Target:  5'- cGGUCAGCGacugGCGGUAUcu--GUCGCa -3'
miRNA:   3'- -CCAGUCGCaa--UGCUGUAuuuuCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 20710 0.69 0.921918
Target:  5'- cGG-CAGUGUUGCGugGU---GGCCu- -3'
miRNA:   3'- -CCaGUCGCAAUGCugUAuuuUCGGcg -5'
1056 5' -46.8 NC_000929.1 + 24728 0.69 0.908338
Target:  5'- cGGUCAGCagguUGGCAUcc--GCCGCu -3'
miRNA:   3'- -CCAGUCGcaauGCUGUAuuuuCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 13754 0.7 0.860068
Target:  5'- uGUCAcGCGUgcUGAUu--GAAGCCGCc -3'
miRNA:   3'- cCAGU-CGCAauGCUGuauUUUCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 10792 0.72 0.801793
Target:  5'- cGUCAGCGgcACccugacaaGACAUcGAuuGCCGCa -3'
miRNA:   3'- cCAGUCGCaaUG--------CUGUA-UUuuCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 27082 0.72 0.779478
Target:  5'- uGG-CAGCGgcGCaGACAUAccgggcaGAAGCUGCc -3'
miRNA:   3'- -CCaGUCGCaaUG-CUGUAU-------UUUCGGCG- -5'
1056 5' -46.8 NC_000929.1 + 12257 1.17 0.001502
Target:  5'- aGGUCAGCGUUACGACAUAAAAGCCGCg -3'
miRNA:   3'- -CCAGUCGCAAUGCUGUAUUUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.