miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10560 3' -59.7 NC_002687.1 + 62001 0.66 0.895196
Target:  5'- -gUCGGAUGGguugaACUCCGacGUGUCGGCa -3'
miRNA:   3'- uuGGCCUGCCg----UGAGGU--CGCAGUCGa -5'
10560 3' -59.7 NC_002687.1 + 224714 0.66 0.895196
Target:  5'- uGCgGGAUGGCACggUCCAGaugGUguGCa -3'
miRNA:   3'- uUGgCCUGCCGUG--AGGUCg--CAguCGa -5'
10560 3' -59.7 NC_002687.1 + 332260 0.66 0.888921
Target:  5'- uGCgGcGGCGGCGCUUgGGCGUggaGGCg -3'
miRNA:   3'- uUGgC-CUGCCGUGAGgUCGCAg--UCGa -5'
10560 3' -59.7 NC_002687.1 + 47789 0.66 0.882448
Target:  5'- cACCGGA-GGCugUCCccccaGUCGGCa -3'
miRNA:   3'- uUGGCCUgCCGugAGGucg--CAGUCGa -5'
10560 3' -59.7 NC_002687.1 + 98148 0.67 0.868916
Target:  5'- uGCCGGugGuGCcaGCggugCCAGCGgugcCAGCa -3'
miRNA:   3'- uUGGCCugC-CG--UGa---GGUCGCa---GUCGa -5'
10560 3' -59.7 NC_002687.1 + 32028 0.67 0.854636
Target:  5'- gAugCuGACGGCGCUCCgcaAGUGUC-GCa -3'
miRNA:   3'- -UugGcCUGCCGUGAGG---UCGCAGuCGa -5'
10560 3' -59.7 NC_002687.1 + 82381 0.67 0.847227
Target:  5'- aAGCCGGGCgauGGC-CUCCcGC-UCAGCa -3'
miRNA:   3'- -UUGGCCUG---CCGuGAGGuCGcAGUCGa -5'
10560 3' -59.7 NC_002687.1 + 47218 0.67 0.831899
Target:  5'- cACCGGACaaaGGaCAC-CCAGCGcucgaaUCAGCg -3'
miRNA:   3'- uUGGCCUG---CC-GUGaGGUCGC------AGUCGa -5'
10560 3' -59.7 NC_002687.1 + 69984 0.68 0.815116
Target:  5'- uGCCGcuGGCGGCuCUggcggucuuugugCUAGCGUCAGCUu -3'
miRNA:   3'- uUGGC--CUGCCGuGA-------------GGUCGCAGUCGA- -5'
10560 3' -59.7 NC_002687.1 + 302259 0.69 0.764719
Target:  5'- uAGCCGGugGGC-CUCCu-CGUCGGa- -3'
miRNA:   3'- -UUGGCCugCCGuGAGGucGCAGUCga -5'
10560 3' -59.7 NC_002687.1 + 256245 0.69 0.755778
Target:  5'- cGCUGGACGGUACgaaagCCAuCGUguGCUu -3'
miRNA:   3'- uUGGCCUGCCGUGa----GGUcGCAguCGA- -5'
10560 3' -59.7 NC_002687.1 + 168770 0.69 0.737613
Target:  5'- -cCCgGGACGGUgcccccggucgGCUCCuGUGUCAGCc -3'
miRNA:   3'- uuGG-CCUGCCG-----------UGAGGuCGCAGUCGa -5'
10560 3' -59.7 NC_002687.1 + 280320 0.69 0.731176
Target:  5'- -gUCGGACGGagguguuggagugugUCCAGCGUCGGCa -3'
miRNA:   3'- uuGGCCUGCCgug------------AGGUCGCAGUCGa -5'
10560 3' -59.7 NC_002687.1 + 225218 0.71 0.652743
Target:  5'- cGACCGuGcCGGCGCcgCC-GCGUCGGCg -3'
miRNA:   3'- -UUGGC-CuGCCGUGa-GGuCGCAGUCGa -5'
10560 3' -59.7 NC_002687.1 + 316180 0.71 0.623932
Target:  5'- gGugCGGcgGCGGCAC-CCGGCG-CGGCg -3'
miRNA:   3'- -UugGCC--UGCCGUGaGGUCGCaGUCGa -5'
10560 3' -59.7 NC_002687.1 + 201834 0.74 0.448678
Target:  5'- aAugCGGGCGcGgACUCCAGCGgCGGCUu -3'
miRNA:   3'- -UugGCCUGC-CgUGAGGUCGCaGUCGA- -5'
10560 3' -59.7 NC_002687.1 + 279006 1.06 0.004616
Target:  5'- gAACCGGACGGCACUCCAGCGUCAGCUg -3'
miRNA:   3'- -UUGGCCUGCCGUGAGGUCGCAGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.