miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10560 5' -51.2 NC_002687.1 + 11403 0.66 0.999714
Target:  5'- gCAGCaGCgguaGC-GGUGGCAgCAGCg -3'
miRNA:   3'- gGUUGaCGaag-UGaCCACUGUgGUCG- -5'
10560 5' -51.2 NC_002687.1 + 11526 0.66 0.999714
Target:  5'- gCAGCUGCgaCACgagcGGU---ACCAGCg -3'
miRNA:   3'- gGUUGACGaaGUGa---CCAcugUGGUCG- -5'
10560 5' -51.2 NC_002687.1 + 208863 0.66 0.999674
Target:  5'- uCCAucgucGCUGCUguccCAUcguccuugagguccuUGGUGucguucucgGCACCAGCg -3'
miRNA:   3'- -GGU-----UGACGAa---GUG---------------ACCAC---------UGUGGUCG- -5'
10560 5' -51.2 NC_002687.1 + 46812 0.66 0.999644
Target:  5'- uCCAACUGUUUCACcGGaGAUAagaGGUc -3'
miRNA:   3'- -GGUUGACGAAGUGaCCaCUGUgg-UCG- -5'
10560 5' -51.2 NC_002687.1 + 313696 0.66 0.999644
Target:  5'- aCAAUcguUGCUUCAaUGcGUGcACGCCAGg -3'
miRNA:   3'- gGUUG---ACGAAGUgAC-CAC-UGUGGUCg -5'
10560 5' -51.2 NC_002687.1 + 234614 0.66 0.999644
Target:  5'- gCCAGCUGUUUCuGCUucaaGGCACgGGCc -3'
miRNA:   3'- -GGUUGACGAAG-UGAcca-CUGUGgUCG- -5'
10560 5' -51.2 NC_002687.1 + 205051 0.66 0.999559
Target:  5'- gCGACguUGCggCACaUGGUGACGuCCGuGCc -3'
miRNA:   3'- gGUUG--ACGaaGUG-ACCACUGU-GGU-CG- -5'
10560 5' -51.2 NC_002687.1 + 238253 0.66 0.99954
Target:  5'- gCC-GCUGCacggUCGCaugauccUGGUcagcgccGACGCCGGCa -3'
miRNA:   3'- -GGuUGACGa---AGUG-------ACCA-------CUGUGGUCG- -5'
10560 5' -51.2 NC_002687.1 + 231582 0.66 0.999457
Target:  5'- -gAGCgUGCUUgGCgucguaGGUGGCAgCGGCu -3'
miRNA:   3'- ggUUG-ACGAAgUGa-----CCACUGUgGUCG- -5'
10560 5' -51.2 NC_002687.1 + 166919 0.66 0.999457
Target:  5'- aCAACaGCUUCAgCUGcUGuACGCCGGg -3'
miRNA:   3'- gGUUGaCGAAGU-GACcAC-UGUGGUCg -5'
10560 5' -51.2 NC_002687.1 + 306606 0.66 0.999457
Target:  5'- aCCGAuuuCUGCcUCAC--GUGAaaaCACCAGCa -3'
miRNA:   3'- -GGUU---GACGaAGUGacCACU---GUGGUCG- -5'
10560 5' -51.2 NC_002687.1 + 303571 0.66 0.999457
Target:  5'- uCCAuCgcaCUcCACUGGcGACGCUAGCu -3'
miRNA:   3'- -GGUuGac-GAaGUGACCaCUGUGGUCG- -5'
10560 5' -51.2 NC_002687.1 + 289686 0.66 0.999335
Target:  5'- aCCAugUGUgaaGCUGGUcgcuugucaaGGCAUgGGCa -3'
miRNA:   3'- -GGUugACGaagUGACCA----------CUGUGgUCG- -5'
10560 5' -51.2 NC_002687.1 + 224135 0.66 0.999335
Target:  5'- gCUGGCggugGCgguggCGCUGGcgcUGGCGCUGGCg -3'
miRNA:   3'- -GGUUGa---CGaa---GUGACC---ACUGUGGUCG- -5'
10560 5' -51.2 NC_002687.1 + 288533 0.66 0.999335
Target:  5'- aCCAugUGUgaaGCUGGUcgcuugucaaGGCAUgGGCa -3'
miRNA:   3'- -GGUugACGaagUGACCA----------CUGUGgUCG- -5'
10560 5' -51.2 NC_002687.1 + 288789 0.66 0.999335
Target:  5'- aCCAugUGUgaaGCUGGUcgcuugucaaGGCAUgGGCa -3'
miRNA:   3'- -GGUugACGaagUGACCA----------CUGUGgUCG- -5'
10560 5' -51.2 NC_002687.1 + 289943 0.66 0.999335
Target:  5'- aCCAugUGUgaaGCUGGUcgcuugucaaGGCAUgGGCa -3'
miRNA:   3'- -GGUugACGaagUGACCA----------CUGUGgUCG- -5'
10560 5' -51.2 NC_002687.1 + 267478 0.66 0.999335
Target:  5'- cCCAuACUGCaacaAUUGGUuGCACCAGg -3'
miRNA:   3'- -GGU-UGACGaag-UGACCAcUGUGGUCg -5'
10560 5' -51.2 NC_002687.1 + 200293 0.66 0.999335
Target:  5'- ---uCUGUUgagcCACUGuGcgGACGCCAGCa -3'
miRNA:   3'- gguuGACGAa---GUGAC-Ca-CUGUGGUCG- -5'
10560 5' -51.2 NC_002687.1 + 147879 0.66 0.99919
Target:  5'- cUCGGCgUGCUUgCGCU--UGAgACCAGCg -3'
miRNA:   3'- -GGUUG-ACGAA-GUGAccACUgUGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.