Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10561 | 3' | -57.9 | NC_002687.1 | + | 11333 | 0.69 | 0.814935 |
Target: 5'- aGCgGCgGC-AgCAgGAGCAGCGGGUGu -3' miRNA: 3'- aCG-CGgUGaUgGUgCUCGUCGUCCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 11576 | 0.66 | 0.947074 |
Target: 5'- uUGCGUCACU-CCAUGcGGCA-CAGGg- -3' miRNA: 3'- -ACGCGGUGAuGGUGC-UCGUcGUCCac -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 55497 | 0.7 | 0.798141 |
Target: 5'- gUGCGUgGCaugGuuACGAGCAcgcGCAGGUGg -3' miRNA: 3'- -ACGCGgUGa--UggUGCUCGU---CGUCCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 63442 | 0.66 | 0.938427 |
Target: 5'- cGUG-UGCUACCugGAGUGGCuGGUu -3' miRNA: 3'- aCGCgGUGAUGGugCUCGUCGuCCAc -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 80803 | 0.67 | 0.901402 |
Target: 5'- -aCGCCuCUgucaaagaacgcACgCACGAGCAGUAGGUa -3' miRNA: 3'- acGCGGuGA------------UG-GUGCUCGUCGUCCAc -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 81705 | 0.76 | 0.434942 |
Target: 5'- aGCGCCACcauuuuguugggUGCCGCGAGguGUgaugAGGUGu -3' miRNA: 3'- aCGCGGUG------------AUGGUGCUCguCG----UCCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 97171 | 0.68 | 0.888911 |
Target: 5'- cGUGCCGCUAaacaacgauCCugucgcgacauACGAGCAGCGcGUGg -3' miRNA: 3'- aCGCGGUGAU---------GG-----------UGCUCGUCGUcCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 125478 | 0.7 | 0.771953 |
Target: 5'- gGCG-CACUGCCACGAGCAaaacuuucccucGCAGa-- -3' miRNA: 3'- aCGCgGUGAUGGUGCUCGU------------CGUCcac -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 158751 | 0.69 | 0.838986 |
Target: 5'- --gGCCGCUgaaaGCCGCGGGCgaGGCcGGUGc -3' miRNA: 3'- acgCGGUGA----UGGUGCUCG--UCGuCCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 197941 | 0.67 | 0.913053 |
Target: 5'- aGCGCCGagGCCGa-AGCAGCcgaAGGUGu -3' miRNA: 3'- aCGCGGUgaUGGUgcUCGUCG---UCCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 241520 | 0.67 | 0.913053 |
Target: 5'- cGcCGCCACcguugGCCACc-GCGGCGGGg- -3' miRNA: 3'- aC-GCGGUGa----UGGUGcuCGUCGUCCac -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 254631 | 0.76 | 0.452183 |
Target: 5'- cGCGUgGCUGCUGCGAcaccgucuGCAGCAGGUu -3' miRNA: 3'- aCGCGgUGAUGGUGCU--------CGUCGUCCAc -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 279256 | 1.09 | 0.004066 |
Target: 5'- cUGCGCCACUACCACGAGCAGCAGGUGg -3' miRNA: 3'- -ACGCGGUGAUGGUGCUCGUCGUCCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 291824 | 0.68 | 0.861511 |
Target: 5'- cGCGCC---ACCAUGGGC-GCAGGa- -3' miRNA: 3'- aCGCGGugaUGGUGCUCGuCGUCCac -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 291990 | 0.69 | 0.838986 |
Target: 5'- cGCGUcccugCACUACCauaaACGuGCGGCGGGg- -3' miRNA: 3'- aCGCG-----GUGAUGG----UGCuCGUCGUCCac -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 301519 | 0.69 | 0.83113 |
Target: 5'- gGCGaUCACUucaACCuACGGGCAGaGGGUGa -3' miRNA: 3'- aCGC-GGUGA---UGG-UGCUCGUCgUCCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 304198 | 0.66 | 0.937516 |
Target: 5'- gGC-CCGCUgcugucaucggugGCCGCGAugacguuGguGCGGGUGg -3' miRNA: 3'- aCGcGGUGA-------------UGGUGCU-------CguCGUCCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 304238 | 0.69 | 0.838986 |
Target: 5'- aGCGCUACUGCUGCu-GCAGCuacGGUu -3' miRNA: 3'- aCGCGGUGAUGGUGcuCGUCGu--CCAc -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 307630 | 0.69 | 0.838986 |
Target: 5'- gGUGgUGCUGgCACGGGCGGCGgcGGUGc -3' miRNA: 3'- aCGCgGUGAUgGUGCUCGUCGU--CCAC- -5' |
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10561 | 3' | -57.9 | NC_002687.1 | + | 309221 | 0.72 | 0.697744 |
Target: 5'- cUGaCGCCcCcACCAcCGAGCAGCGGGa- -3' miRNA: 3'- -AC-GCGGuGaUGGU-GCUCGUCGUCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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