miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10561 5' -57.8 NC_002687.1 + 292511 0.66 0.959044
Target:  5'- gACCAUCGGCagCAgCAGGAGcguAGUCuucuGCu -3'
miRNA:   3'- -UGGUGGCCGg-GUgGUCUUC---UCAGu---CG- -5'
10561 5' -57.8 NC_002687.1 + 205379 0.66 0.955518
Target:  5'- --gACCGGUCCgAUCGGAAGcuucGGUCgAGCa -3'
miRNA:   3'- uggUGGCCGGG-UGGUCUUC----UCAG-UCG- -5'
10561 5' -57.8 NC_002687.1 + 280327 0.66 0.951791
Target:  5'- gAUCACCGGCaucaCGCggCAGggGAacuugGUCGGUc -3'
miRNA:   3'- -UGGUGGCCGg---GUG--GUCuuCU-----CAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 91794 0.66 0.951791
Target:  5'- uCCACCGGCUCuguugcacuCCAGAuGGcuUCAGUg -3'
miRNA:   3'- uGGUGGCCGGGu--------GGUCU-UCucAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 260390 0.66 0.951791
Target:  5'- aACCG-CGGCCCACCGGAcaaucUCAcGCu -3'
miRNA:   3'- -UGGUgGCCGGGUGGUCUucuc-AGU-CG- -5'
10561 5' -57.8 NC_002687.1 + 282119 0.66 0.951407
Target:  5'- uACCGCagggagaGGCUCACCuuGGAuggaaguAGGGUCuGCg -3'
miRNA:   3'- -UGGUGg------CCGGGUGG--UCU-------UCUCAGuCG- -5'
10561 5' -57.8 NC_002687.1 + 210316 0.66 0.943723
Target:  5'- cACCACCGGCaCCACgGGcacauaCGGCa -3'
miRNA:   3'- -UGGUGGCCG-GGUGgUCuucucaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 261604 0.66 0.943723
Target:  5'- cCCGCCGGCaagaugagCugCAu--GGGUCAGCa -3'
miRNA:   3'- uGGUGGCCGg-------GugGUcuuCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 99752 0.66 0.939377
Target:  5'- -gCACCaGGaCuCCAUCAGAGGGGuguuUCGGCg -3'
miRNA:   3'- ugGUGG-CC-G-GGUGGUCUUCUC----AGUCG- -5'
10561 5' -57.8 NC_002687.1 + 225217 0.66 0.939377
Target:  5'- gACCguGCCGGCgCCGCCGc----GUCGGCg -3'
miRNA:   3'- -UGG--UGGCCG-GGUGGUcuucuCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 202209 0.66 0.939377
Target:  5'- aGCCACUGuGCcaagCCGCCGcuGGAGUCcGCg -3'
miRNA:   3'- -UGGUGGC-CG----GGUGGUcuUCUCAGuCG- -5'
10561 5' -57.8 NC_002687.1 + 86097 0.66 0.939377
Target:  5'- cCCACgaGGCCagcgggGCCAGcGGGGcCAGCg -3'
miRNA:   3'- uGGUGg-CCGGg-----UGGUCuUCUCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 299748 0.67 0.934822
Target:  5'- gACCACCGGaagCAgCAGAAGaAGcCAGUc -3'
miRNA:   3'- -UGGUGGCCgg-GUgGUCUUC-UCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 296953 0.67 0.934822
Target:  5'- uCCGCCuGCUgCACCGGggG-GUgAGCu -3'
miRNA:   3'- uGGUGGcCGG-GUGGUCuuCuCAgUCG- -5'
10561 5' -57.8 NC_002687.1 + 47585 0.67 0.931987
Target:  5'- uACCGUCGGCagCAUuugcacagcaguacgCGGAAGAGUUAGCg -3'
miRNA:   3'- -UGGUGGCCGg-GUG---------------GUCUUCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 145835 0.67 0.919886
Target:  5'- uGCuCGCCGaggcGCgCGCCGGGGcgcuGGGUCAGCu -3'
miRNA:   3'- -UG-GUGGC----CGgGUGGUCUU----CUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 112069 0.67 0.919886
Target:  5'- uGCCAUUGGCCuugaCACCGGAugcGGAGaagAGCa -3'
miRNA:   3'- -UGGUGGCCGG----GUGGUCU---UCUCag-UCG- -5'
10561 5' -57.8 NC_002687.1 + 4574 0.67 0.919886
Target:  5'- aGCCuGCCGaGCUCugacgcCCGGAAGGGUgGGUg -3'
miRNA:   3'- -UGG-UGGC-CGGGu-----GGUCUUCUCAgUCG- -5'
10561 5' -57.8 NC_002687.1 + 188147 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 187437 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.