miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10561 5' -57.8 NC_002687.1 + 47585 0.67 0.931987
Target:  5'- uACCGUCGGCagCAUuugcacagcaguacgCGGAAGAGUUAGCg -3'
miRNA:   3'- -UGGUGGCCGg-GUG---------------GUCUUCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 299748 0.67 0.934822
Target:  5'- gACCACCGGaagCAgCAGAAGaAGcCAGUc -3'
miRNA:   3'- -UGGUGGCCgg-GUgGUCUUC-UCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 4574 0.67 0.919886
Target:  5'- aGCCuGCCGaGCUCugacgcCCGGAAGGGUgGGUg -3'
miRNA:   3'- -UGG-UGGC-CGGGu-----GGUCUUCUCAgUCG- -5'
10561 5' -57.8 NC_002687.1 + 191463 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 191226 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 185780 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 186253 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 186726 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 186963 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 187200 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 187437 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 188147 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 188386 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 188859 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 189095 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 189332 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 189807 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 190043 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 190516 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 190753 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.