Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10561 | 5' | -57.8 | NC_002687.1 | + | 190043 | 0.67 | 0.914484 |
Target: 5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3' miRNA: 3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 190516 | 0.67 | 0.914484 |
Target: 5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3' miRNA: 3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 190753 | 0.67 | 0.914484 |
Target: 5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3' miRNA: 3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 122418 | 0.68 | 0.903051 |
Target: 5'- aAUUACgaGGaCCACCAGAuuucggacGGAGUCAGUg -3' miRNA: 3'- -UGGUGg-CCgGGUGGUCU--------UCUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 158832 | 0.68 | 0.903051 |
Target: 5'- cGCCGCCGGUCgAaagcCCGGAGGcGG-CGGCc -3' miRNA: 3'- -UGGUGGCCGGgU----GGUCUUC-UCaGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 165599 | 0.68 | 0.897023 |
Target: 5'- gACCAUCGGCaggggggccgUACCAGAAGugcuGUCGGg -3' miRNA: 3'- -UGGUGGCCGg---------GUGGUCUUCu---CAGUCg -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 209829 | 0.68 | 0.89079 |
Target: 5'- aGCUGCC-GCCgGCCGGAGGuAGUCgagguAGCa -3' miRNA: 3'- -UGGUGGcCGGgUGGUCUUC-UCAG-----UCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 56482 | 0.68 | 0.884356 |
Target: 5'- aACCACUGGUCUAUUGGAAGcGUUcGCu -3' miRNA: 3'- -UGGUGGCCGGGUGGUCUUCuCAGuCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 126510 | 0.68 | 0.901264 |
Target: 5'- --aGCCGGCCCGuucCCAGccccugauuuuuuaGAGAGUCgcuGGCa -3' miRNA: 3'- uggUGGCCGGGU---GGUC--------------UUCUCAG---UCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 190280 | 0.68 | 0.903051 |
Target: 5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3' miRNA: 3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 192410 | 0.68 | 0.903051 |
Target: 5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3' miRNA: 3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 300614 | 0.68 | 0.897023 |
Target: 5'- aGCCAcCCGaGCCCAaguggCGGA--AGUCGGCg -3' miRNA: 3'- -UGGU-GGC-CGGGUg----GUCUucUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 284647 | 0.68 | 0.877725 |
Target: 5'- uGCUGCCGGaaaaaagaCCCACCAaGguGAG-CAGCa -3' miRNA: 3'- -UGGUGGCC--------GGGUGGU-CuuCUCaGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 188623 | 0.68 | 0.903051 |
Target: 5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3' miRNA: 3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 187674 | 0.68 | 0.903051 |
Target: 5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3' miRNA: 3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 186490 | 0.68 | 0.903051 |
Target: 5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3' miRNA: 3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 123291 | 0.68 | 0.89079 |
Target: 5'- --aGCCGGCCUACgAGAcGA-UCGGCg -3' miRNA: 3'- uggUGGCCGGGUGgUCUuCUcAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 226846 | 0.69 | 0.840981 |
Target: 5'- cGCCACCGaacaGUCCGCUaaagcugGGGAGAGUCgAGUc -3' miRNA: 3'- -UGGUGGC----CGGGUGG-------UCUUCUCAG-UCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 214758 | 0.69 | 0.863883 |
Target: 5'- cACCACCGGCgCAagugcgaGGAAGAGuuUCAGa -3' miRNA: 3'- -UGGUGGCCGgGUgg-----UCUUCUC--AGUCg -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 315672 | 0.69 | 0.863883 |
Target: 5'- cCCACCGGCaCCAUCGGcaccaUCGGCa -3' miRNA: 3'- uGGUGGCCG-GGUGGUCuucucAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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