miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10561 5' -57.8 NC_002687.1 + 187674 0.68 0.903051
Target:  5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 188623 0.68 0.903051
Target:  5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 190280 0.68 0.903051
Target:  5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 192410 0.68 0.903051
Target:  5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 300614 0.68 0.897023
Target:  5'- aGCCAcCCGaGCCCAaguggCGGA--AGUCGGCg -3'
miRNA:   3'- -UGGU-GGC-CGGGUg----GUCUucUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 158832 0.68 0.903051
Target:  5'- cGCCGCCGGUCgAaagcCCGGAGGcGG-CGGCc -3'
miRNA:   3'- -UGGUGGCCGGgU----GGUCUUC-UCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 126510 0.68 0.901264
Target:  5'- --aGCCGGCCCGuucCCAGccccugauuuuuuaGAGAGUCgcuGGCa -3'
miRNA:   3'- uggUGGCCGGGU---GGUC--------------UUCUCAG---UCG- -5'
10561 5' -57.8 NC_002687.1 + 165599 0.68 0.897023
Target:  5'- gACCAUCGGCaggggggccgUACCAGAAGugcuGUCGGg -3'
miRNA:   3'- -UGGUGGCCGg---------GUGGUCUUCu---CAGUCg -5'
10561 5' -57.8 NC_002687.1 + 123291 0.68 0.89079
Target:  5'- --aGCCGGCCUACgAGAcGA-UCGGCg -3'
miRNA:   3'- uggUGGCCGGGUGgUCUuCUcAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 56482 0.68 0.884356
Target:  5'- aACCACUGGUCUAUUGGAAGcGUUcGCu -3'
miRNA:   3'- -UGGUGGCCGGGUGGUCUUCuCAGuCG- -5'
10561 5' -57.8 NC_002687.1 + 209829 0.68 0.89079
Target:  5'- aGCUGCC-GCCgGCCGGAGGuAGUCgagguAGCa -3'
miRNA:   3'- -UGGUGGcCGGgUGGUCUUC-UCAG-----UCG- -5'
10561 5' -57.8 NC_002687.1 + 122418 0.68 0.903051
Target:  5'- aAUUACgaGGaCCACCAGAuuucggacGGAGUCAGUg -3'
miRNA:   3'- -UGGUGg-CCgGGUGGUCU--------UCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 284647 0.68 0.877725
Target:  5'- uGCUGCCGGaaaaaagaCCCACCAaGguGAG-CAGCa -3'
miRNA:   3'- -UGGUGGCC--------GGGUGGU-CuuCUCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 188147 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 296953 0.67 0.934822
Target:  5'- uCCGCCuGCUgCACCGGggG-GUgAGCu -3'
miRNA:   3'- uGGUGGcCGG-GUGGUCuuCuCAgUCG- -5'
10561 5' -57.8 NC_002687.1 + 193832 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 193358 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 193120 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 187437 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 194068 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.