miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10561 5' -57.8 NC_002687.1 + 279290 1.11 0.003089
Target:  5'- cACCACCGGCCCACCAGAAGAGUCAGCg -3'
miRNA:   3'- -UGGUGGCCGGGUGGUCUUCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 97795 0.78 0.3842
Target:  5'- cACCGCUGGCCCACCGGcaccaUCGGCa -3'
miRNA:   3'- -UGGUGGCCGGGUGGUCuucucAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 85450 0.75 0.539199
Target:  5'- gGCCGCCGGguCCCACCGGuccccagggucuaAAGGGUaCAGUg -3'
miRNA:   3'- -UGGUGGCC--GGGUGGUC-------------UUCUCA-GUCG- -5'
10561 5' -57.8 NC_002687.1 + 85373 0.74 0.586537
Target:  5'- uGCCACCGGCCUuucgcagACCGcGGGGGaCGGCa -3'
miRNA:   3'- -UGGUGGCCGGG-------UGGUcUUCUCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 47776 0.74 0.616295
Target:  5'- gGCaCACCuGCgCCACCGGAGGcuguccccccAGUCGGCa -3'
miRNA:   3'- -UG-GUGGcCG-GGUGGUCUUC----------UCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 308845 0.73 0.625924
Target:  5'- uGCCACCGGaggccuCCCGCUgcucggugguGGggGcGUCAGCg -3'
miRNA:   3'- -UGGUGGCC------GGGUGG----------UCuuCuCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 87392 0.72 0.693072
Target:  5'- aGCaGCCcGUCUACCAGAGgccGAGUCAGCa -3'
miRNA:   3'- -UGgUGGcCGGGUGGUCUU---CUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 203162 0.72 0.711021
Target:  5'- cACCugAUCGGgcucuaaCCCAUCGGAGGAGUgCAGCa -3'
miRNA:   3'- -UGG--UGGCC-------GGGUGGUCUUCUCA-GUCG- -5'
10561 5' -57.8 NC_002687.1 + 324731 0.72 0.717582
Target:  5'- cCCGCCGGCCaCGCCAGcaaacgcgagauGGGUCAagaGCg -3'
miRNA:   3'- uGGUGGCCGG-GUGGUCuu----------CUCAGU---CG- -5'
10561 5' -57.8 NC_002687.1 + 324348 0.72 0.717582
Target:  5'- cCCGCCGGCCaCGCCAGcaaacgcgagauGGGUCAagaGCg -3'
miRNA:   3'- uGGUGGCCGG-GUGGUCuu----------CUCAGU---CG- -5'
10561 5' -57.8 NC_002687.1 + 325115 0.7 0.789667
Target:  5'- cCCGCCGGCCaCGCCAGcaaacgcgagauGGGUCAagaguGCa -3'
miRNA:   3'- uGGUGGCCGG-GUGGUCuu----------CUCAGU-----CG- -5'
10561 5' -57.8 NC_002687.1 + 323964 0.7 0.789667
Target:  5'- cCCGCCGGCCaCGCCAGcaaacgcgagauGGGUCAagaguGCa -3'
miRNA:   3'- uGGUGGCCGG-GUGGUCuu----------CUCAGU-----CG- -5'
10561 5' -57.8 NC_002687.1 + 308806 0.7 0.8099
Target:  5'- -gUACCGGUCuCACCGGGAGGG--GGCg -3'
miRNA:   3'- ugGUGGCCGG-GUGGUCUUCUCagUCG- -5'
10561 5' -57.8 NC_002687.1 + 154424 0.7 0.826136
Target:  5'- cGCaCGCCGGCagcaACCuGGAGuucGUCAGCa -3'
miRNA:   3'- -UG-GUGGCCGgg--UGGuCUUCu--CAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 36296 0.69 0.834022
Target:  5'- aACUA-UGGUCCACCGGAAuagaacguuucGAGUCGGUa -3'
miRNA:   3'- -UGGUgGCCGGGUGGUCUU-----------CUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 226846 0.69 0.840981
Target:  5'- cGCCACCGaacaGUCCGCUaaagcugGGGAGAGUCgAGUc -3'
miRNA:   3'- -UGGUGGC----CGGGUGG-------UCUUCUCAG-UCG- -5'
10561 5' -57.8 NC_002687.1 + 214758 0.69 0.863883
Target:  5'- cACCACCGGCgCAagugcgaGGAAGAGuuUCAGa -3'
miRNA:   3'- -UGGUGGCCGgGUgg-----UCUUCUC--AGUCg -5'
10561 5' -57.8 NC_002687.1 + 315672 0.69 0.863883
Target:  5'- cCCACCGGCaCCAUCGGcaccaUCGGCa -3'
miRNA:   3'- uGGUGGCCG-GGUGGUCuucucAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 240837 0.69 0.870899
Target:  5'- uACCgACCGGUCCACauguuGAguGGuGUCAGUg -3'
miRNA:   3'- -UGG-UGGCCGGGUGgu---CU--UCuCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 284647 0.68 0.877725
Target:  5'- uGCUGCCGGaaaaaagaCCCACCAaGguGAG-CAGCa -3'
miRNA:   3'- -UGGUGGCC--------GGGUGGU-CuuCUCaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.