Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10561 | 5' | -57.8 | NC_002687.1 | + | 4574 | 0.67 | 0.919886 |
Target: 5'- aGCCuGCCGaGCUCugacgcCCGGAAGGGUgGGUg -3' miRNA: 3'- -UGG-UGGC-CGGGu-----GGUCUUCUCAgUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 36296 | 0.69 | 0.834022 |
Target: 5'- aACUA-UGGUCCACCGGAAuagaacguuucGAGUCGGUa -3' miRNA: 3'- -UGGUgGCCGGGUGGUCUU-----------CUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 47585 | 0.67 | 0.931987 |
Target: 5'- uACCGUCGGCagCAUuugcacagcaguacgCGGAAGAGUUAGCg -3' miRNA: 3'- -UGGUGGCCGg-GUG---------------GUCUUCUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 47776 | 0.74 | 0.616295 |
Target: 5'- gGCaCACCuGCgCCACCGGAGGcuguccccccAGUCGGCa -3' miRNA: 3'- -UG-GUGGcCG-GGUGGUCUUC----------UCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 56482 | 0.68 | 0.884356 |
Target: 5'- aACCACUGGUCUAUUGGAAGcGUUcGCu -3' miRNA: 3'- -UGGUGGCCGGGUGGUCUUCuCAGuCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 85373 | 0.74 | 0.586537 |
Target: 5'- uGCCACCGGCCUuucgcagACCGcGGGGGaCGGCa -3' miRNA: 3'- -UGGUGGCCGGG-------UGGUcUUCUCaGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 85450 | 0.75 | 0.539199 |
Target: 5'- gGCCGCCGGguCCCACCGGuccccagggucuaAAGGGUaCAGUg -3' miRNA: 3'- -UGGUGGCC--GGGUGGUC-------------UUCUCA-GUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 86000 | 0.67 | 0.911142 |
Target: 5'- gACCAgCUGGCCCcugaauaccuuuggcACCAaGAGGGcCGGCu -3' miRNA: 3'- -UGGU-GGCCGGG---------------UGGUcUUCUCaGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 86097 | 0.66 | 0.939377 |
Target: 5'- cCCACgaGGCCagcgggGCCAGcGGGGcCAGCg -3' miRNA: 3'- uGGUGg-CCGGg-----UGGUCuUCUCaGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 87392 | 0.72 | 0.693072 |
Target: 5'- aGCaGCCcGUCUACCAGAGgccGAGUCAGCa -3' miRNA: 3'- -UGgUGGcCGGGUGGUCUU---CUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 91794 | 0.66 | 0.951791 |
Target: 5'- uCCACCGGCUCuguugcacuCCAGAuGGcuUCAGUg -3' miRNA: 3'- uGGUGGCCGGGu--------GGUCU-UCucAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 97795 | 0.78 | 0.3842 |
Target: 5'- cACCGCUGGCCCACCGGcaccaUCGGCa -3' miRNA: 3'- -UGGUGGCCGGGUGGUCuucucAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 99752 | 0.66 | 0.939377 |
Target: 5'- -gCACCaGGaCuCCAUCAGAGGGGuguuUCGGCg -3' miRNA: 3'- ugGUGG-CC-G-GGUGGUCUUCUC----AGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 112069 | 0.67 | 0.919886 |
Target: 5'- uGCCAUUGGCCuugaCACCGGAugcGGAGaagAGCa -3' miRNA: 3'- -UGGUGGCCGG----GUGGUCU---UCUCag-UCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 122418 | 0.68 | 0.903051 |
Target: 5'- aAUUACgaGGaCCACCAGAuuucggacGGAGUCAGUg -3' miRNA: 3'- -UGGUGg-CCgGGUGGUCU--------UCUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 123291 | 0.68 | 0.89079 |
Target: 5'- --aGCCGGCCUACgAGAcGA-UCGGCg -3' miRNA: 3'- uggUGGCCGGGUGgUCUuCUcAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 126510 | 0.68 | 0.901264 |
Target: 5'- --aGCCGGCCCGuucCCAGccccugauuuuuuaGAGAGUCgcuGGCa -3' miRNA: 3'- uggUGGCCGGGU---GGUC--------------UUCUCAG---UCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 145835 | 0.67 | 0.919886 |
Target: 5'- uGCuCGCCGaggcGCgCGCCGGGGcgcuGGGUCAGCu -3' miRNA: 3'- -UG-GUGGC----CGgGUGGUCUU----CUCAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 154424 | 0.7 | 0.826136 |
Target: 5'- cGCaCGCCGGCagcaACCuGGAGuucGUCAGCa -3' miRNA: 3'- -UG-GUGGCCGgg--UGGuCUUCu--CAGUCG- -5' |
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10561 | 5' | -57.8 | NC_002687.1 | + | 158832 | 0.68 | 0.903051 |
Target: 5'- cGCCGCCGGUCgAaagcCCGGAGGcGG-CGGCc -3' miRNA: 3'- -UGGUGGCCGGgU----GGUCUUC-UCaGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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