miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10561 5' -57.8 NC_002687.1 + 191226 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 191463 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 191936 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 192410 0.68 0.903051
Target:  5'- cCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 192647 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 193120 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 193358 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 193832 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 194068 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 194308 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 202209 0.66 0.939377
Target:  5'- aGCCACUGuGCcaagCCGCCGcuGGAGUCcGCg -3'
miRNA:   3'- -UGGUGGC-CG----GGUGGUcuUCUCAGuCG- -5'
10561 5' -57.8 NC_002687.1 + 203162 0.72 0.711021
Target:  5'- cACCugAUCGGgcucuaaCCCAUCGGAGGAGUgCAGCa -3'
miRNA:   3'- -UGG--UGGCC-------GGGUGGUCUUCUCA-GUCG- -5'
10561 5' -57.8 NC_002687.1 + 205379 0.66 0.955518
Target:  5'- --gACCGGUCCgAUCGGAAGcuucGGUCgAGCa -3'
miRNA:   3'- uggUGGCCGGG-UGGUCUUC----UCAG-UCG- -5'
10561 5' -57.8 NC_002687.1 + 209829 0.68 0.89079
Target:  5'- aGCUGCC-GCCgGCCGGAGGuAGUCgagguAGCa -3'
miRNA:   3'- -UGGUGGcCGGgUGGUCUUC-UCAG-----UCG- -5'
10561 5' -57.8 NC_002687.1 + 210316 0.66 0.943723
Target:  5'- cACCACCGGCaCCACgGGcacauaCGGCa -3'
miRNA:   3'- -UGGUGGCCG-GGUGgUCuucucaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 214758 0.69 0.863883
Target:  5'- cACCACCGGCgCAagugcgaGGAAGAGuuUCAGa -3'
miRNA:   3'- -UGGUGGCCGgGUgg-----UCUUCUC--AGUCg -5'
10561 5' -57.8 NC_002687.1 + 225217 0.66 0.939377
Target:  5'- gACCguGCCGGCgCCGCCGc----GUCGGCg -3'
miRNA:   3'- -UGG--UGGCCG-GGUGGUcuucuCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 226846 0.69 0.840981
Target:  5'- cGCCACCGaacaGUCCGCUaaagcugGGGAGAGUCgAGUc -3'
miRNA:   3'- -UGGUGGC----CGGGUGG-------UCUUCUCAG-UCG- -5'
10561 5' -57.8 NC_002687.1 + 240837 0.69 0.870899
Target:  5'- uACCgACCGGUCCACauguuGAguGGuGUCAGUg -3'
miRNA:   3'- -UGG-UGGCCGGGUGgu---CU--UCuCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 260390 0.66 0.951791
Target:  5'- aACCG-CGGCCCACCGGAcaaucUCAcGCu -3'
miRNA:   3'- -UGGUgGCCGGGUGGUCUucuc-AGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.