miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10561 5' -57.8 NC_002687.1 + 261604 0.66 0.943723
Target:  5'- cCCGCCGGCaagaugagCugCAu--GGGUCAGCa -3'
miRNA:   3'- uGGUGGCCGg-------GugGUcuuCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 279290 1.11 0.003089
Target:  5'- cACCACCGGCCCACCAGAAGAGUCAGCg -3'
miRNA:   3'- -UGGUGGCCGGGUGGUCUUCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 280327 0.66 0.951791
Target:  5'- gAUCACCGGCaucaCGCggCAGggGAacuugGUCGGUc -3'
miRNA:   3'- -UGGUGGCCGg---GUG--GUCuuCU-----CAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 282119 0.66 0.951407
Target:  5'- uACCGCagggagaGGCUCACCuuGGAuggaaguAGGGUCuGCg -3'
miRNA:   3'- -UGGUGg------CCGGGUGG--UCU-------UCUCAGuCG- -5'
10561 5' -57.8 NC_002687.1 + 284647 0.68 0.877725
Target:  5'- uGCUGCCGGaaaaaagaCCCACCAaGguGAG-CAGCa -3'
miRNA:   3'- -UGGUGGCC--------GGGUGGU-CuuCUCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 292511 0.66 0.959044
Target:  5'- gACCAUCGGCagCAgCAGGAGcguAGUCuucuGCu -3'
miRNA:   3'- -UGGUGGCCGg-GUgGUCUUC---UCAGu---CG- -5'
10561 5' -57.8 NC_002687.1 + 296953 0.67 0.934822
Target:  5'- uCCGCCuGCUgCACCGGggG-GUgAGCu -3'
miRNA:   3'- uGGUGGcCGG-GUGGUCuuCuCAgUCG- -5'
10561 5' -57.8 NC_002687.1 + 299748 0.67 0.934822
Target:  5'- gACCACCGGaagCAgCAGAAGaAGcCAGUc -3'
miRNA:   3'- -UGGUGGCCgg-GUgGUCUUC-UCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 300614 0.68 0.897023
Target:  5'- aGCCAcCCGaGCCCAaguggCGGA--AGUCGGCg -3'
miRNA:   3'- -UGGU-GGC-CGGGUg----GUCUucUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 308806 0.7 0.8099
Target:  5'- -gUACCGGUCuCACCGGGAGGG--GGCg -3'
miRNA:   3'- ugGUGGCCGG-GUGGUCUUCUCagUCG- -5'
10561 5' -57.8 NC_002687.1 + 308845 0.73 0.625924
Target:  5'- uGCCACCGGaggccuCCCGCUgcucggugguGGggGcGUCAGCg -3'
miRNA:   3'- -UGGUGGCC------GGGUGG----------UCuuCuCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 315672 0.69 0.863883
Target:  5'- cCCACCGGCaCCAUCGGcaccaUCGGCa -3'
miRNA:   3'- uGGUGGCCG-GGUGGUCuucucAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 323964 0.7 0.789667
Target:  5'- cCCGCCGGCCaCGCCAGcaaacgcgagauGGGUCAagaguGCa -3'
miRNA:   3'- uGGUGGCCGG-GUGGUCuu----------CUCAGU-----CG- -5'
10561 5' -57.8 NC_002687.1 + 324348 0.72 0.717582
Target:  5'- cCCGCCGGCCaCGCCAGcaaacgcgagauGGGUCAagaGCg -3'
miRNA:   3'- uGGUGGCCGG-GUGGUCuu----------CUCAGU---CG- -5'
10561 5' -57.8 NC_002687.1 + 324731 0.72 0.717582
Target:  5'- cCCGCCGGCCaCGCCAGcaaacgcgagauGGGUCAagaGCg -3'
miRNA:   3'- uGGUGGCCGG-GUGGUCuu----------CUCAGU---CG- -5'
10561 5' -57.8 NC_002687.1 + 325115 0.7 0.789667
Target:  5'- cCCGCCGGCCaCGCCAGcaaacgcgagauGGGUCAagaguGCa -3'
miRNA:   3'- uGGUGGCCGG-GUGGUCuu----------CUCAGU-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.