miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10561 5' -57.8 NC_002687.1 + 279290 1.11 0.003089
Target:  5'- cACCACCGGCCCACCAGAAGAGUCAGCg -3'
miRNA:   3'- -UGGUGGCCGGGUGGUCUUCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 112069 0.67 0.919886
Target:  5'- uGCCAUUGGCCuugaCACCGGAugcGGAGaagAGCa -3'
miRNA:   3'- -UGGUGGCCGG----GUGGUCU---UCUCag-UCG- -5'
10561 5' -57.8 NC_002687.1 + 299748 0.67 0.934822
Target:  5'- gACCACCGGaagCAgCAGAAGaAGcCAGUc -3'
miRNA:   3'- -UGGUGGCCgg-GUgGUCUUC-UCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 292511 0.66 0.959044
Target:  5'- gACCAUCGGCagCAgCAGGAGcguAGUCuucuGCu -3'
miRNA:   3'- -UGGUGGCCGg-GUgGUCUUC---UCAGu---CG- -5'
10561 5' -57.8 NC_002687.1 + 47776 0.74 0.616295
Target:  5'- gGCaCACCuGCgCCACCGGAGGcuguccccccAGUCGGCa -3'
miRNA:   3'- -UG-GUGGcCG-GGUGGUCUUC----------UCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 308845 0.73 0.625924
Target:  5'- uGCCACCGGaggccuCCCGCUgcucggugguGGggGcGUCAGCg -3'
miRNA:   3'- -UGGUGGCC------GGGUGG----------UCuuCuCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 315672 0.69 0.863883
Target:  5'- cCCACCGGCaCCAUCGGcaccaUCGGCa -3'
miRNA:   3'- uGGUGGCCG-GGUGGUCuucucAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 240837 0.69 0.870899
Target:  5'- uACCgACCGGUCCACauguuGAguGGuGUCAGUg -3'
miRNA:   3'- -UGG-UGGCCGGGUGgu---CU--UCuCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 209829 0.68 0.89079
Target:  5'- aGCUGCC-GCCgGCCGGAGGuAGUCgagguAGCa -3'
miRNA:   3'- -UGGUGGcCGGgUGGUCUUC-UCAG-----UCG- -5'
10561 5' -57.8 NC_002687.1 + 4574 0.67 0.919886
Target:  5'- aGCCuGCCGaGCUCugacgcCCGGAAGGGUgGGUg -3'
miRNA:   3'- -UGG-UGGC-CGGGu-----GGUCUUCUCAgUCG- -5'
10561 5' -57.8 NC_002687.1 + 126510 0.68 0.901264
Target:  5'- --aGCCGGCCCGuucCCAGccccugauuuuuuaGAGAGUCgcuGGCa -3'
miRNA:   3'- uggUGGCCGGGU---GGUC--------------UUCUCAG---UCG- -5'
10561 5' -57.8 NC_002687.1 + 123291 0.68 0.89079
Target:  5'- --aGCCGGCCUACgAGAcGA-UCGGCg -3'
miRNA:   3'- uggUGGCCGGGUGgUCUuCUcAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 97795 0.78 0.3842
Target:  5'- cACCGCUGGCCCACCGGcaccaUCGGCa -3'
miRNA:   3'- -UGGUGGCCGGGUGGUCuucucAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 122418 0.68 0.903051
Target:  5'- aAUUACgaGGaCCACCAGAuuucggacGGAGUCAGUg -3'
miRNA:   3'- -UGGUGg-CCgGGUGGUCU--------UCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 85450 0.75 0.539199
Target:  5'- gGCCGCCGGguCCCACCGGuccccagggucuaAAGGGUaCAGUg -3'
miRNA:   3'- -UGGUGGCC--GGGUGGUC-------------UUCUCA-GUCG- -5'
10561 5' -57.8 NC_002687.1 + 56482 0.68 0.884356
Target:  5'- aACCACUGGUCUAUUGGAAGcGUUcGCu -3'
miRNA:   3'- -UGGUGGCCGGGUGGUCUUCuCAGuCG- -5'
10561 5' -57.8 NC_002687.1 + 158832 0.68 0.903051
Target:  5'- cGCCGCCGGUCgAaagcCCGGAGGcGG-CGGCc -3'
miRNA:   3'- -UGGUGGCCGGgU----GGUCUUC-UCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 47585 0.67 0.931987
Target:  5'- uACCGUCGGCagCAUuugcacagcaguacgCGGAAGAGUUAGCg -3'
miRNA:   3'- -UGGUGGCCGg-GUG---------------GUCUUCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 85373 0.74 0.586537
Target:  5'- uGCCACCGGCCUuucgcagACCGcGGGGGaCGGCa -3'
miRNA:   3'- -UGGUGGCCGGG-------UGGUcUUCUCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 87392 0.72 0.693072
Target:  5'- aGCaGCCcGUCUACCAGAGgccGAGUCAGCa -3'
miRNA:   3'- -UGgUGGcCGGGUGGUCUU---CUCAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.