miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10561 5' -57.8 NC_002687.1 + 85373 0.74 0.586537
Target:  5'- uGCCACCGGCCUuucgcagACCGcGGGGGaCGGCa -3'
miRNA:   3'- -UGGUGGCCGGG-------UGGUcUUCUCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 280327 0.66 0.951791
Target:  5'- gAUCACCGGCaucaCGCggCAGggGAacuugGUCGGUc -3'
miRNA:   3'- -UGGUGGCCGg---GUG--GUCuuCU-----CAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 112069 0.67 0.919886
Target:  5'- uGCCAUUGGCCuugaCACCGGAugcGGAGaagAGCa -3'
miRNA:   3'- -UGGUGGCCGG----GUGGUCU---UCUCag-UCG- -5'
10561 5' -57.8 NC_002687.1 + 85450 0.75 0.539199
Target:  5'- gGCCGCCGGguCCCACCGGuccccagggucuaAAGGGUaCAGUg -3'
miRNA:   3'- -UGGUGGCC--GGGUGGUC-------------UUCUCA-GUCG- -5'
10561 5' -57.8 NC_002687.1 + 97795 0.78 0.3842
Target:  5'- cACCGCUGGCCCACCGGcaccaUCGGCa -3'
miRNA:   3'- -UGGUGGCCGGGUGGUCuucucAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 279290 1.11 0.003089
Target:  5'- cACCACCGGCCCACCAGAAGAGUCAGCg -3'
miRNA:   3'- -UGGUGGCCGGGUGGUCUUCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 296953 0.67 0.934822
Target:  5'- uCCGCCuGCUgCACCGGggG-GUgAGCu -3'
miRNA:   3'- uGGUGGcCGG-GUGGUCuuCuCAgUCG- -5'
10561 5' -57.8 NC_002687.1 + 261604 0.66 0.943723
Target:  5'- cCCGCCGGCaagaugagCugCAu--GGGUCAGCa -3'
miRNA:   3'- uGGUGGCCGg-------GugGUcuuCUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 193832 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 193358 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 188147 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 187437 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 187200 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 186963 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 86097 0.66 0.939377
Target:  5'- cCCACgaGGCCagcgggGCCAGcGGGGcCAGCg -3'
miRNA:   3'- uGGUGg-CCGGg-----UGGUCuUCUCaGUCG- -5'
10561 5' -57.8 NC_002687.1 + 191226 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 191463 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 191936 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 192647 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5'
10561 5' -57.8 NC_002687.1 + 193120 0.67 0.914484
Target:  5'- uCCAUCGGUCCuCC-GAA-AGUCGGCg -3'
miRNA:   3'- uGGUGGCCGGGuGGuCUUcUCAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.