miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10562 3' -49.8 NC_002687.1 + 225064 0.66 0.999863
Target:  5'- gCAGCuGGGGCuGCAGcCGGagAGGAACGu -3'
miRNA:   3'- -GUCGuCCUUGuCGUU-GUCg-UCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 166909 0.66 0.999863
Target:  5'- -cGCAGGGgguacaACAGCuuCAGCugcuguacgccGGGAACAc -3'
miRNA:   3'- guCGUCCU------UGUCGuuGUCG-----------UCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 173128 0.66 0.999863
Target:  5'- gAGCaacaaaGGGaAACGGCAGCAcaAGAAGCAa -3'
miRNA:   3'- gUCG------UCC-UUGUCGUUGUcgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 10378 0.66 0.999863
Target:  5'- gCGGCgacGGGggUGGagaaGGCAGCGGAcGCGa -3'
miRNA:   3'- -GUCG---UCCuuGUCg---UUGUCGUCUuUGU- -5'
10562 3' -49.8 NC_002687.1 + 8662 0.66 0.999859
Target:  5'- cCGGCGGGAaaACGGUgcccgccAGCAGCAuccGACAg -3'
miRNA:   3'- -GUCGUCCU--UGUCG-------UUGUCGUcu-UUGU- -5'
10562 3' -49.8 NC_002687.1 + 263372 0.66 0.999859
Target:  5'- -uGCAGGAAUcuguguggaGGUGACGGCAuuccgagccuggcGAAACAa -3'
miRNA:   3'- guCGUCCUUG---------UCGUUGUCGU-------------CUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 312223 0.66 0.999824
Target:  5'- aCGGaAGcGAGCGGCGgaGCAGCGGGAuCGg -3'
miRNA:   3'- -GUCgUC-CUUGUCGU--UGUCGUCUUuGU- -5'
10562 3' -49.8 NC_002687.1 + 39990 0.66 0.999824
Target:  5'- uGGCAcacGGuuuCAGCGuACcGCAGAAACAa -3'
miRNA:   3'- gUCGU---CCuu-GUCGU-UGuCGUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 218944 0.66 0.999824
Target:  5'- uUAGCAGaucguACAGCAGCAuaagaAGAGACAg -3'
miRNA:   3'- -GUCGUCcu---UGUCGUUGUcg---UCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 223496 0.66 0.999797
Target:  5'- uGGCGGGGGCgggggaagccgugguGGCGACAGCAc----- -3'
miRNA:   3'- gUCGUCCUUG---------------UCGUUGUCGUcuuugu -5'
10562 3' -49.8 NC_002687.1 + 50949 0.66 0.999777
Target:  5'- gAGCGGGGAUGaaaAACAGCGGAucgucuAGCAa -3'
miRNA:   3'- gUCGUCCUUGUcg-UUGUCGUCU------UUGU- -5'
10562 3' -49.8 NC_002687.1 + 283893 0.66 0.999777
Target:  5'- -cGCA---GCAGCAGCGGCuGggGCu -3'
miRNA:   3'- guCGUccuUGUCGUUGUCGuCuuUGu -5'
10562 3' -49.8 NC_002687.1 + 105428 0.66 0.999777
Target:  5'- cCAG-GGGAugAGCGACgaucaAGCAGAuGACGg -3'
miRNA:   3'- -GUCgUCCUugUCGUUG-----UCGUCU-UUGU- -5'
10562 3' -49.8 NC_002687.1 + 204190 0.66 0.999777
Target:  5'- -cGCGGGGGCGGUgccgAACAGCAcGGugGa -3'
miRNA:   3'- guCGUCCUUGUCG----UUGUCGUcUUugU- -5'
10562 3' -49.8 NC_002687.1 + 50063 0.66 0.999777
Target:  5'- gAGCGGGGAUGaaaAACAGCGGAucgucuAGCAa -3'
miRNA:   3'- gUCGUCCUUGUcg-UUGUCGUCU------UUGU- -5'
10562 3' -49.8 NC_002687.1 + 72554 0.66 0.999718
Target:  5'- uCGGCGGuGuguCGGCGGCGGCGGcgucGGCAc -3'
miRNA:   3'- -GUCGUC-Cuu-GUCGUUGUCGUCu---UUGU- -5'
10562 3' -49.8 NC_002687.1 + 324664 0.66 0.999718
Target:  5'- aAGCGGGGGCGGuCAAguggauauCAGCAGGc--- -3'
miRNA:   3'- gUCGUCCUUGUC-GUU--------GUCGUCUuugu -5'
10562 3' -49.8 NC_002687.1 + 48173 0.66 0.999718
Target:  5'- aGGCAGGGagaACAGCAuagacaugccgACuGgGGGGACAg -3'
miRNA:   3'- gUCGUCCU---UGUCGU-----------UGuCgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 293721 0.66 0.999718
Target:  5'- gAGCAGGGGCGGCGG-GGCcGAuuguACGa -3'
miRNA:   3'- gUCGUCCUUGUCGUUgUCGuCUu---UGU- -5'
10562 3' -49.8 NC_002687.1 + 8783 0.66 0.999718
Target:  5'- -cGCGGGAAgGGCGuacgaGCAGCGcGAAGgAa -3'
miRNA:   3'- guCGUCCUUgUCGU-----UGUCGU-CUUUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.