miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10562 3' -49.8 NC_002687.1 + 8662 0.66 0.999859
Target:  5'- cCGGCGGGAaaACGGUgcccgccAGCAGCAuccGACAg -3'
miRNA:   3'- -GUCGUCCU--UGUCG-------UUGUCGUcu-UUGU- -5'
10562 3' -49.8 NC_002687.1 + 225011 0.66 0.999712
Target:  5'- gAGCuGGAGCgggugguGGCGugGGCGuccGAGACAa -3'
miRNA:   3'- gUCGuCCUUG-------UCGUugUCGU---CUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 324664 0.66 0.999718
Target:  5'- aAGCGGGGGCGGuCAAguggauauCAGCAGGc--- -3'
miRNA:   3'- gUCGUCCUUGUC-GUU--------GUCGUCUuugu -5'
10562 3' -49.8 NC_002687.1 + 113305 0.66 0.999646
Target:  5'- aCGGaCAGGccgAGCAGcCGACGGCGGAu--- -3'
miRNA:   3'- -GUC-GUCC---UUGUC-GUUGUCGUCUuugu -5'
10562 3' -49.8 NC_002687.1 + 34259 0.66 0.999718
Target:  5'- ---aAGGAGCAGUucgguGCGGCGGAAGa- -3'
miRNA:   3'- gucgUCCUUGUCGu----UGUCGUCUUUgu -5'
10562 3' -49.8 NC_002687.1 + 224179 0.66 0.999646
Target:  5'- uGGCGGGGGCagugcugguGGCggUGGCGGugGCGg -3'
miRNA:   3'- gUCGUCCUUG---------UCGuuGUCGUCuuUGU- -5'
10562 3' -49.8 NC_002687.1 + 293721 0.66 0.999718
Target:  5'- gAGCAGGGGCGGCGG-GGCcGAuuguACGa -3'
miRNA:   3'- gUCGUCCUUGUCGUUgUCGuCUu---UGU- -5'
10562 3' -49.8 NC_002687.1 + 173128 0.66 0.999863
Target:  5'- gAGCaacaaaGGGaAACGGCAGCAcaAGAAGCAa -3'
miRNA:   3'- gUCG------UCC-UUGUCGUUGUcgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 323897 0.66 0.999718
Target:  5'- aAGCGGGGGCGGuCAAguggauauCAGCAGGc--- -3'
miRNA:   3'- gUCGUCCUUGUC-GUU--------GUCGUCUuugu -5'
10562 3' -49.8 NC_002687.1 + 324281 0.66 0.999718
Target:  5'- aAGCGGGGGCGGuCAAguggauauCAGCAGGc--- -3'
miRNA:   3'- gUCGUCCUUGUC-GUU--------GUCGUCUuugu -5'
10562 3' -49.8 NC_002687.1 + 55695 0.66 0.999646
Target:  5'- aAGCAGGGACuuAGCAuAgAGCAGGccCAc -3'
miRNA:   3'- gUCGUCCUUG--UCGU-UgUCGUCUuuGU- -5'
10562 3' -49.8 NC_002687.1 + 325048 0.66 0.999718
Target:  5'- aAGCGGGGGCGGuCAAguggauauCAGCAGGc--- -3'
miRNA:   3'- gUCGUCCUUGUC-GUU--------GUCGUCUuugu -5'
10562 3' -49.8 NC_002687.1 + 312223 0.66 0.999824
Target:  5'- aCGGaAGcGAGCGGCGgaGCAGCGGGAuCGg -3'
miRNA:   3'- -GUCgUC-CUUGUCGU--UGUCGUCUUuGU- -5'
10562 3' -49.8 NC_002687.1 + 50063 0.66 0.999777
Target:  5'- gAGCGGGGAUGaaaAACAGCGGAucgucuAGCAa -3'
miRNA:   3'- gUCGUCCUUGUcg-UUGUCGUCU------UUGU- -5'
10562 3' -49.8 NC_002687.1 + 50949 0.66 0.999777
Target:  5'- gAGCGGGGAUGaaaAACAGCGGAucgucuAGCAa -3'
miRNA:   3'- gUCGUCCUUGUcg-UUGUCGUCU------UUGU- -5'
10562 3' -49.8 NC_002687.1 + 48173 0.66 0.999718
Target:  5'- aGGCAGGGagaACAGCAuagacaugccgACuGgGGGGACAg -3'
miRNA:   3'- gUCGUCCU---UGUCGU-----------UGuCgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 118006 0.66 0.999718
Target:  5'- uGGCAGGcgccauCGGUuGCAGgAGAGGCGu -3'
miRNA:   3'- gUCGUCCuu----GUCGuUGUCgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 290981 0.66 0.999646
Target:  5'- cCAGCAagaaucccccGGAagacguugcACAGCAGCAGCGcauGACAc -3'
miRNA:   3'- -GUCGU----------CCU---------UGUCGUUGUCGUcu-UUGU- -5'
10562 3' -49.8 NC_002687.1 + 307944 0.66 0.999646
Target:  5'- gGGgAGGGuuACGGCAgacgaaagaauaAUGGCAGGGACAc -3'
miRNA:   3'- gUCgUCCU--UGUCGU------------UGUCGUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 307622 0.66 0.999646
Target:  5'- uGGCAcGGGCGGCGGCGGUgcuggugguGGAGGCc -3'
miRNA:   3'- gUCGUcCUUGUCGUUGUCG---------UCUUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.