miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10562 3' -49.8 NC_002687.1 + 118006 0.66 0.999718
Target:  5'- uGGCAGGcgccauCGGUuGCAGgAGAGGCGu -3'
miRNA:   3'- gUCGUCCuu----GUCGuUGUCgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 48173 0.66 0.999718
Target:  5'- aGGCAGGGagaACAGCAuagacaugccgACuGgGGGGACAg -3'
miRNA:   3'- gUCGUCCU---UGUCGU-----------UGuCgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 331092 0.66 0.999718
Target:  5'- aAGCAGaGACAGCuGCuGCAaucGggGCAa -3'
miRNA:   3'- gUCGUCcUUGUCGuUGuCGU---CuuUGU- -5'
10562 3' -49.8 NC_002687.1 + 72554 0.66 0.999718
Target:  5'- uCGGCGGuGuguCGGCGGCGGCGGcgucGGCAc -3'
miRNA:   3'- -GUCGUC-Cuu-GUCGUUGUCGUCu---UUGU- -5'
10562 3' -49.8 NC_002687.1 + 8783 0.66 0.999718
Target:  5'- -cGCGGGAAgGGCGuacgaGCAGCGcGAAGgAa -3'
miRNA:   3'- guCGUCCUUgUCGU-----UGUCGU-CUUUgU- -5'
10562 3' -49.8 NC_002687.1 + 293721 0.66 0.999718
Target:  5'- gAGCAGGGGCGGCGG-GGCcGAuuguACGa -3'
miRNA:   3'- gUCGUCCUUGUCGUUgUCGuCUu---UGU- -5'
10562 3' -49.8 NC_002687.1 + 34259 0.66 0.999718
Target:  5'- ---aAGGAGCAGUucgguGCGGCGGAAGa- -3'
miRNA:   3'- gucgUCCUUGUCGu----UGUCGUCUUUgu -5'
10562 3' -49.8 NC_002687.1 + 225011 0.66 0.999712
Target:  5'- gAGCuGGAGCgggugguGGCGugGGCGuccGAGACAa -3'
miRNA:   3'- gUCGuCCUUG-------UCGUugUCGU---CUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 224179 0.66 0.999646
Target:  5'- uGGCGGGGGCagugcugguGGCggUGGCGGugGCGg -3'
miRNA:   3'- gUCGUCCUUG---------UCGuuGUCGUCuuUGU- -5'
10562 3' -49.8 NC_002687.1 + 307944 0.66 0.999646
Target:  5'- gGGgAGGGuuACGGCAgacgaaagaauaAUGGCAGGGACAc -3'
miRNA:   3'- gUCgUCCU--UGUCGU------------UGUCGUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 307622 0.66 0.999646
Target:  5'- uGGCAcGGGCGGCGGCGGUgcuggugguGGAGGCc -3'
miRNA:   3'- gUCGUcCUUGUCGUUGUCG---------UCUUUGu -5'
10562 3' -49.8 NC_002687.1 + 290981 0.66 0.999646
Target:  5'- cCAGCAagaaucccccGGAagacguugcACAGCAGCAGCGcauGACAc -3'
miRNA:   3'- -GUCGU----------CCU---------UGUCGUUGUCGUcu-UUGU- -5'
10562 3' -49.8 NC_002687.1 + 113305 0.66 0.999646
Target:  5'- aCGGaCAGGccgAGCAGcCGACGGCGGAu--- -3'
miRNA:   3'- -GUC-GUCC---UUGUC-GUUGUCGUCUuugu -5'
10562 3' -49.8 NC_002687.1 + 55695 0.66 0.999646
Target:  5'- aAGCAGGGACuuAGCAuAgAGCAGGccCAc -3'
miRNA:   3'- gUCGUCCUUG--UCGU-UgUCGUCUuuGU- -5'
10562 3' -49.8 NC_002687.1 + 281622 0.67 0.999596
Target:  5'- aCAGUgAGGAgauucaacuccagagGCAGCAacGCGGCAcGAACAg -3'
miRNA:   3'- -GUCG-UCCU---------------UGUCGU--UGUCGUcUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 309894 0.67 0.999559
Target:  5'- uGGguGGGGCGGUggGGCAGUGGAGu-- -3'
miRNA:   3'- gUCguCCUUGUCG--UUGUCGUCUUugu -5'
10562 3' -49.8 NC_002687.1 + 73331 0.67 0.999559
Target:  5'- gAGaCGGuGACGGCGACAGCAacgcGggGCu -3'
miRNA:   3'- gUC-GUCcUUGUCGUUGUCGU----CuuUGu -5'
10562 3' -49.8 NC_002687.1 + 10906 0.67 0.999559
Target:  5'- aCAGCacacAGGAccGCGGcCAGCAG-AGAGGCGa -3'
miRNA:   3'- -GUCG----UCCU--UGUC-GUUGUCgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 210034 0.67 0.999453
Target:  5'- uGGCAGuGGuGCAGCuGCAGguGuuGCAg -3'
miRNA:   3'- gUCGUC-CU-UGUCGuUGUCguCuuUGU- -5'
10562 3' -49.8 NC_002687.1 + 99904 0.67 0.999453
Target:  5'- gAGgAGGGACgAGgGAgAGUGGAGACAa -3'
miRNA:   3'- gUCgUCCUUG-UCgUUgUCGUCUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.