miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10562 3' -49.8 NC_002687.1 + 8662 0.66 0.999859
Target:  5'- cCGGCGGGAaaACGGUgcccgccAGCAGCAuccGACAg -3'
miRNA:   3'- -GUCGUCCU--UGUCG-------UUGUCGUcu-UUGU- -5'
10562 3' -49.8 NC_002687.1 + 8783 0.66 0.999718
Target:  5'- -cGCGGGAAgGGCGuacgaGCAGCGcGAAGgAa -3'
miRNA:   3'- guCGUCCUUgUCGU-----UGUCGU-CUUUgU- -5'
10562 3' -49.8 NC_002687.1 + 10046 0.8 0.710128
Target:  5'- -uGguGGcAGCAGCAGCAGCAGuAGCAg -3'
miRNA:   3'- guCguCC-UUGUCGUUGUCGUCuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 10315 0.76 0.886409
Target:  5'- gCAGCAGuGGCGGCGGCAGUGGcgGCGg -3'
miRNA:   3'- -GUCGUCcUUGUCGUUGUCGUCuuUGU- -5'
10562 3' -49.8 NC_002687.1 + 10378 0.66 0.999863
Target:  5'- gCGGCgacGGGggUGGagaaGGCAGCGGAcGCGa -3'
miRNA:   3'- -GUCG---UCCuuGUCg---UUGUCGUCUuUGU- -5'
10562 3' -49.8 NC_002687.1 + 10420 0.71 0.98244
Target:  5'- gCAGCAGGggUguguguagaAGCAGUAGCGGuAGCAu -3'
miRNA:   3'- -GUCGUCCuuG---------UCGUUGUCGUCuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 10906 0.67 0.999559
Target:  5'- aCAGCacacAGGAccGCGGcCAGCAG-AGAGGCGa -3'
miRNA:   3'- -GUCG----UCCU--UGUC-GUUGUCgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 11310 0.78 0.788027
Target:  5'- gGGCGGucAGCAGCAGCAGCAGuAGCGg -3'
miRNA:   3'- gUCGUCc-UUGUCGUUGUCGUCuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 11340 0.93 0.168442
Target:  5'- gCAGCAGGAgcagcgggugucggaGCAGCAGCAGCAGAAGCc -3'
miRNA:   3'- -GUCGUCCU---------------UGUCGUUGUCGUCUUUGu -5'
10562 3' -49.8 NC_002687.1 + 11388 0.71 0.987705
Target:  5'- gCAGUAGccGCGGUAGCAGCAGcgguAGCGg -3'
miRNA:   3'- -GUCGUCcuUGUCGUUGUCGUCu---UUGU- -5'
10562 3' -49.8 NC_002687.1 + 11419 0.83 0.545725
Target:  5'- uGGCAGcAGCGGCAGCAGCAGuAGCAg -3'
miRNA:   3'- gUCGUCcUUGUCGUUGUCGUCuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 11445 0.73 0.961734
Target:  5'- gUAGCGGGuguaguagcaaccguGGUAGCAGCAGUAGAAGCu -3'
miRNA:   3'- -GUCGUCC---------------UUGUCGUUGUCGUCUUUGu -5'
10562 3' -49.8 NC_002687.1 + 11490 0.76 0.879335
Target:  5'- gUAGCAGGggUAGCGgucguaGCAGCGGcgGCu -3'
miRNA:   3'- -GUCGUCCuuGUCGU------UGUCGUCuuUGu -5'
10562 3' -49.8 NC_002687.1 + 11523 0.69 0.995286
Target:  5'- aUAGCAGcugcgacacGAGCGGUAcCAGCGGAGAUc -3'
miRNA:   3'- -GUCGUC---------CUUGUCGUuGUCGUCUUUGu -5'
10562 3' -49.8 NC_002687.1 + 12031 0.72 0.967078
Target:  5'- -uGCAGcAGCAGCAAguGCAGAaaaaGACAg -3'
miRNA:   3'- guCGUCcUUGUCGUUguCGUCU----UUGU- -5'
10562 3' -49.8 NC_002687.1 + 12172 0.87 0.370003
Target:  5'- uCGGCagaAGGAGCAGCAgcgGCAGCGGAAGCGg -3'
miRNA:   3'- -GUCG---UCCUUGUCGU---UGUCGUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 12208 0.69 0.996544
Target:  5'- gCAGCuguGGAacgagccguaACAGCGGCGGguGGcAGCAg -3'
miRNA:   3'- -GUCGu--CCU----------UGUCGUUGUCguCU-UUGU- -5'
10562 3' -49.8 NC_002687.1 + 13017 0.7 0.991658
Target:  5'- gCAGCAGaGAGCuGGUgaaaGGCAGCAGGguAGCAg -3'
miRNA:   3'- -GUCGUC-CUUG-UCG----UUGUCGUCU--UUGU- -5'
10562 3' -49.8 NC_002687.1 + 13725 0.7 0.991658
Target:  5'- aCAGCAGGcACAGCAGuguGUAGcAACAc -3'
miRNA:   3'- -GUCGUCCuUGUCGUUgu-CGUCuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 13986 0.7 0.991658
Target:  5'- aCAGCAGGcACAGCAGuguGUAGcAACAc -3'
miRNA:   3'- -GUCGUCCuUGUCGUUgu-CGUCuUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.