miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10562 3' -49.8 NC_002687.1 + 282951 1.09 0.018976
Target:  5'- gCAGCAGGAACAGCAACAGCAGAAACAa -3'
miRNA:   3'- -GUCGUCCUUGUCGUUGUCGUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 11490 0.76 0.879335
Target:  5'- gUAGCAGGggUAGCGgucguaGCAGCGGcgGCu -3'
miRNA:   3'- -GUCGUCCuuGUCGU------UGUCGUCuuUGu -5'
10562 3' -49.8 NC_002687.1 + 10315 0.76 0.886409
Target:  5'- gCAGCAGuGGCGGCGGCAGUGGcgGCGg -3'
miRNA:   3'- -GUCGUCcUUGUCGUUGUCGUCuuUGU- -5'
10562 3' -49.8 NC_002687.1 + 173128 0.66 0.999863
Target:  5'- gAGCaacaaaGGGaAACGGCAGCAcaAGAAGCAa -3'
miRNA:   3'- gUCG------UCC-UUGUCGUUGUcgUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 102452 0.85 0.457932
Target:  5'- gCAGCAGaGAcaggcGCAGCAGCGGCAGAuGCAg -3'
miRNA:   3'- -GUCGUC-CU-----UGUCGUUGUCGUCUuUGU- -5'
10562 3' -49.8 NC_002687.1 + 11419 0.83 0.545725
Target:  5'- uGGCAGcAGCGGCAGCAGCAGuAGCAg -3'
miRNA:   3'- gUCGUCcUUGUCGUUGUCGUCuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 102578 0.81 0.6175
Target:  5'- aCAGCAGcAACAGCAACAGCAacAGCAg -3'
miRNA:   3'- -GUCGUCcUUGUCGUUGUCGUcuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 10046 0.8 0.710128
Target:  5'- -uGguGGcAGCAGCAGCAGCAGuAGCAg -3'
miRNA:   3'- guCguCC-UUGUCGUUGUCGUCuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 279157 0.78 0.778694
Target:  5'- gGGCAGGAaaaagcgcgugcGCAGCGGCGGUgccGGAAGCGu -3'
miRNA:   3'- gUCGUCCU------------UGUCGUUGUCG---UCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 224455 0.76 0.872035
Target:  5'- uGGCGGcGGCAGCGGCAGCGGcAGCu -3'
miRNA:   3'- gUCGUCcUUGUCGUUGUCGUCuUUGu -5'
10562 3' -49.8 NC_002687.1 + 102539 0.77 0.848838
Target:  5'- aCAGCAGcAACAGCAACAGC-GAAuuuuGCAg -3'
miRNA:   3'- -GUCGUCcUUGUCGUUGUCGuCUU----UGU- -5'
10562 3' -49.8 NC_002687.1 + 281792 0.79 0.740112
Target:  5'- -uGUGGGAACGGCGGgGGCAGggGCc -3'
miRNA:   3'- guCGUCCUUGUCGUUgUCGUCuuUGu -5'
10562 3' -49.8 NC_002687.1 + 11340 0.93 0.168442
Target:  5'- gCAGCAGGAgcagcgggugucggaGCAGCAGCAGCAGAAGCc -3'
miRNA:   3'- -GUCGUCCU---------------UGUCGUUGUCGUCUUUGu -5'
10562 3' -49.8 NC_002687.1 + 282148 0.76 0.856781
Target:  5'- aAGUAGGGucugcgGCGGCAGCGGCGGGAGu- -3'
miRNA:   3'- gUCGUCCU------UGUCGUUGUCGUCUUUgu -5'
10562 3' -49.8 NC_002687.1 + 208192 0.88 0.33058
Target:  5'- gCAGCAGcAGCAGCAGCAGCAGcGACAg -3'
miRNA:   3'- -GUCGUCcUUGUCGUUGUCGUCuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 282060 0.79 0.730201
Target:  5'- gCGGCAGGGGCcguaguGGCAGCAGCGGcgGCu -3'
miRNA:   3'- -GUCGUCCUUG------UCGUUGUCGUCuuUGu -5'
10562 3' -49.8 NC_002687.1 + 102493 0.76 0.872035
Target:  5'- -uGCAgauGGAACAGCAGCAGCAacAGCGa -3'
miRNA:   3'- guCGU---CCUUGUCGUUGUCGUcuUUGU- -5'
10562 3' -49.8 NC_002687.1 + 283187 0.76 0.879335
Target:  5'- gCAGCAacaGGGGCGGCAgcaccaggcGCGGCGGggGCc -3'
miRNA:   3'- -GUCGU---CCUUGUCGU---------UGUCGUCuuUGu -5'
10562 3' -49.8 NC_002687.1 + 12172 0.87 0.370003
Target:  5'- uCGGCagaAGGAGCAGCAgcgGCAGCGGAAGCGg -3'
miRNA:   3'- -GUCG---UCCUUGUCGU---UGUCGUCUUUGU- -5'
10562 3' -49.8 NC_002687.1 + 281946 0.82 0.566029
Target:  5'- gCGGCAGGAGCAGgGGCGGUgccgGGggGCAa -3'
miRNA:   3'- -GUCGUCCUUGUCgUUGUCG----UCuuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.