miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10562 5' -60.2 NC_002687.1 + 220058 0.66 0.86132
Target:  5'- --gGCCaagauGCuuGCUGUGGaagcaucuuCUGUGGCAGg -3'
miRNA:   3'- aaaCGG-----CGggCGGCACC---------GACAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 292808 0.66 0.846589
Target:  5'- --gGCCGCCuCGCCaacUGGaagcgGUGGCGGc -3'
miRNA:   3'- aaaCGGCGG-GCGGc--ACCga---CAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 298357 0.66 0.846589
Target:  5'- --gGCCGCCuCGCCaGUcGGaagcgGUGGCGGc -3'
miRNA:   3'- aaaCGGCGG-GCGG-CA-CCga---CAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 18479 0.67 0.831167
Target:  5'- --aGCCGCUCGUgcuaGUGcucCUGUAGCAGc -3'
miRNA:   3'- aaaCGGCGGGCGg---CACc--GACAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 224130 0.67 0.823211
Target:  5'- -cUGgCGCUgGCgGUGGCgGUGGCGc -3'
miRNA:   3'- aaACgGCGGgCGgCACCGaCAUCGUc -5'
10562 5' -60.2 NC_002687.1 + 173655 0.67 0.806843
Target:  5'- -cUGUCGCCCGCgcuauCGaGGCUGcUGGCGu -3'
miRNA:   3'- aaACGGCGGGCG-----GCaCCGAC-AUCGUc -5'
10562 5' -60.2 NC_002687.1 + 39139 0.68 0.781254
Target:  5'- uUUUGCCGCCgGCUGUGG-----GCAGg -3'
miRNA:   3'- -AAACGGCGGgCGGCACCgacauCGUC- -5'
10562 5' -60.2 NC_002687.1 + 224190 0.68 0.781254
Target:  5'- -gUGCUGgUgGCgGUGGCgGUGGCGGu -3'
miRNA:   3'- aaACGGCgGgCGgCACCGaCAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 210012 0.68 0.772476
Target:  5'- -aUGgUGCCUGUgGUGGCagucGUGGCAGu -3'
miRNA:   3'- aaACgGCGGGCGgCACCGa---CAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 209931 0.68 0.763588
Target:  5'- -gUGgUGCCCGUgGUGGCgGUGGUg- -3'
miRNA:   3'- aaACgGCGGGCGgCACCGaCAUCGuc -5'
10562 5' -60.2 NC_002687.1 + 209831 0.69 0.698897
Target:  5'- -cUGCCGCCgGCCGgaGGUagucgagGUAGCAu -3'
miRNA:   3'- aaACGGCGGgCGGCa-CCGa------CAUCGUc -5'
10562 5' -60.2 NC_002687.1 + 298892 0.7 0.622102
Target:  5'- --cGUCGgUgGCUGUGGCUGUGGUGGu -3'
miRNA:   3'- aaaCGGCgGgCGGCACCGACAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 209904 0.7 0.622102
Target:  5'- -gUGgUGCCCGuaGUGGCagugGUGGCAGu -3'
miRNA:   3'- aaACgGCGGGCggCACCGa---CAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 121878 0.71 0.590351
Target:  5'- --cGCCGUCCGUguacgaguccacggCGUGGCccGUGGCGGa -3'
miRNA:   3'- aaaCGGCGGGCG--------------GCACCGa-CAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 226809 0.71 0.574095
Target:  5'- -gUGCCGgUgGCgGUGGCgGUGGCGGu -3'
miRNA:   3'- aaACGGCgGgCGgCACCGaCAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 224160 0.71 0.56458
Target:  5'- -cUGgCGCUgGCgGUGGCgGUGGCGGg -3'
miRNA:   3'- aaACgGCGGgCGgCACCGaCAUCGUC- -5'
10562 5' -60.2 NC_002687.1 + 282985 1.05 0.004261
Target:  5'- cUUUGCCGCCCGCCGUGGCUGUAGCAGc -3'
miRNA:   3'- -AAACGGCGGGCGGCACCGACAUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.