miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10563 3' -46.8 NC_002687.1 + 284309 0.66 0.999999
Target:  5'- uUUCuCUccGUUGCAAAacgcagGUCUAGGGGAa -3'
miRNA:   3'- gAAGuGA--CGACGUUU------UAGAUCCCUUg -5'
10563 3' -46.8 NC_002687.1 + 166925 0.66 0.999999
Target:  5'- gCUUCAgCUGCUGUAcgcc---GGGAACa -3'
miRNA:   3'- -GAAGU-GACGACGUuuuagauCCCUUG- -5'
10563 3' -46.8 NC_002687.1 + 110825 0.66 0.999999
Target:  5'- -aUguCUGUUGuUggGAUCuUGGGGAACg -3'
miRNA:   3'- gaAguGACGAC-GuuUUAG-AUCCCUUG- -5'
10563 3' -46.8 NC_002687.1 + 319261 0.66 0.999999
Target:  5'- --aCACacCUGCAGAAUUccAGGGGACa -3'
miRNA:   3'- gaaGUGacGACGUUUUAGa-UCCCUUG- -5'
10563 3' -46.8 NC_002687.1 + 284184 0.66 0.999999
Target:  5'- --aCACUGCUGUauGAGGUCUgccaagucaacAGuGGAAUg -3'
miRNA:   3'- gaaGUGACGACG--UUUUAGA-----------UC-CCUUG- -5'
10563 3' -46.8 NC_002687.1 + 76146 0.66 0.999999
Target:  5'- -gUCGCUGUUGUugauGAAGUCUuugucGcGGAGCa -3'
miRNA:   3'- gaAGUGACGACG----UUUUAGAu----C-CCUUG- -5'
10563 3' -46.8 NC_002687.1 + 52467 0.66 0.999999
Target:  5'- aUUUAUcgUGCUGCAAGAggacaaaagggugAGGGGACa -3'
miRNA:   3'- gAAGUG--ACGACGUUUUaga----------UCCCUUG- -5'
10563 3' -46.8 NC_002687.1 + 294495 0.66 0.999999
Target:  5'- --aCGCuUGCUGCccgccacagcaaCUAGGGAACa -3'
miRNA:   3'- gaaGUG-ACGACGuuuua-------GAUCCCUUG- -5'
10563 3' -46.8 NC_002687.1 + 246655 0.66 0.999999
Target:  5'- --aCACacCUGCAGAAUUccAGGGGACa -3'
miRNA:   3'- gaaGUGacGACGUUUUAGa-UCCCUUG- -5'
10563 3' -46.8 NC_002687.1 + 324228 0.66 0.999999
Target:  5'- -cUCGCuUGCUGaCAGAAgagAGGGAGu -3'
miRNA:   3'- gaAGUG-ACGAC-GUUUUagaUCCCUUg -5'
10563 3' -46.8 NC_002687.1 + 325379 0.66 0.999999
Target:  5'- -cUCGCuUGCUGaCAGAAgagAGGGAGu -3'
miRNA:   3'- gaAGUG-ACGAC-GUUUUagaUCCCUUg -5'
10563 3' -46.8 NC_002687.1 + 324995 0.66 0.999999
Target:  5'- -cUCGCuUGCUGaCAGAAgagAGGGAGu -3'
miRNA:   3'- gaAGUG-ACGAC-GUUUUagaUCCCUUg -5'
10563 3' -46.8 NC_002687.1 + 324612 0.66 0.999999
Target:  5'- -cUCGCuUGCUGaCAGAAgagAGGGAGu -3'
miRNA:   3'- gaAGUG-ACGAC-GUUUUagaUCCCUUg -5'
10563 3' -46.8 NC_002687.1 + 331102 0.66 0.999998
Target:  5'- ---aGCUGCUGCA--AUC-GGGGcAACa -3'
miRNA:   3'- gaagUGACGACGUuuUAGaUCCC-UUG- -5'
10563 3' -46.8 NC_002687.1 + 270407 0.66 0.999998
Target:  5'- gCUUCggGCgggGCUGCGGA----GGGGGACa -3'
miRNA:   3'- -GAAG--UGa--CGACGUUUuagaUCCCUUG- -5'
10563 3' -46.8 NC_002687.1 + 42256 0.67 0.999996
Target:  5'- --gCGCUGCUGCGAcuUC-AGGaGGAUc -3'
miRNA:   3'- gaaGUGACGACGUUuuAGaUCC-CUUG- -5'
10563 3' -46.8 NC_002687.1 + 216998 0.67 0.999996
Target:  5'- -aUUuuUGCUGCGAuuguUCUucuGGGAGCg -3'
miRNA:   3'- gaAGugACGACGUUuu--AGAu--CCCUUG- -5'
10563 3' -46.8 NC_002687.1 + 63201 0.67 0.999996
Target:  5'- -gUCGCUGCUGgAAAGUgUAuguGGGuGACu -3'
miRNA:   3'- gaAGUGACGACgUUUUAgAU---CCC-UUG- -5'
10563 3' -46.8 NC_002687.1 + 180098 0.67 0.999992
Target:  5'- -aUCGCgcgGCUGCcAAAga-GGGGAACc -3'
miRNA:   3'- gaAGUGa--CGACGuUUUagaUCCCUUG- -5'
10563 3' -46.8 NC_002687.1 + 136527 0.67 0.999985
Target:  5'- ---aACUG-UGCGAGAUCaAGGGAAUc -3'
miRNA:   3'- gaagUGACgACGUUUUAGaUCCCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.