miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10564 3' -57.1 NC_002687.1 + 203978 0.66 0.964543
Target:  5'- aGGCccagUCCGGCCGCGGuGUacaGAcgGaUGGUGu -3'
miRNA:   3'- -CCG----AGGUCGGCGCU-CG---CUuaC-ACCAU- -5'
10564 3' -57.1 NC_002687.1 + 307652 0.66 0.961313
Target:  5'- uGGgaUCGGCgGCG-GUGGcgGUGGUGg -3'
miRNA:   3'- -CCgaGGUCGgCGCuCGCUuaCACCAU- -5'
10564 3' -57.1 NC_002687.1 + 299267 0.66 0.954256
Target:  5'- aGGacgUCCAGCgGCGGGCGAcgagGGUc -3'
miRNA:   3'- -CCg--AGGUCGgCGCUCGCUuacaCCAu -5'
10564 3' -57.1 NC_002687.1 + 225578 0.66 0.95042
Target:  5'- aGCUggGGCCG-GAGCGGGggGUGGUGc -3'
miRNA:   3'- cCGAggUCGGCgCUCGCUUa-CACCAU- -5'
10564 3' -57.1 NC_002687.1 + 159844 0.67 0.94212
Target:  5'- aGCUCCAGUCGUaAGCGAcaggagacuucAUGUcGGUc -3'
miRNA:   3'- cCGAGGUCGGCGcUCGCU-----------UACA-CCAu -5'
10564 3' -57.1 NC_002687.1 + 252977 0.67 0.932968
Target:  5'- gGGCUCgAGgguuuCCGCGAGCGAAgguuUGaUGGc- -3'
miRNA:   3'- -CCGAGgUC-----GGCGCUCGCUU----AC-ACCau -5'
10564 3' -57.1 NC_002687.1 + 36203 0.67 0.928068
Target:  5'- aGGCcucgCCAcCCGUGGGC-AGUGUGGUu -3'
miRNA:   3'- -CCGa---GGUcGGCGCUCGcUUACACCAu -5'
10564 3' -57.1 NC_002687.1 + 24822 0.67 0.922952
Target:  5'- uGCUCUuucGGCUGCcGGCGAGuuuUGUGGUc -3'
miRNA:   3'- cCGAGG---UCGGCGcUCGCUU---ACACCAu -5'
10564 3' -57.1 NC_002687.1 + 312073 0.68 0.917621
Target:  5'- uGGCgCguGCUGUGAGCGccgcuugcacuGUGUGGUGc -3'
miRNA:   3'- -CCGaGguCGGCGCUCGCu----------UACACCAU- -5'
10564 3' -57.1 NC_002687.1 + 226947 0.68 0.917621
Target:  5'- cGGCUCCgucGGCUGCcGGUGGugGUGUcGGUGg -3'
miRNA:   3'- -CCGAGG---UCGGCGcUCGCU--UACA-CCAU- -5'
10564 3' -57.1 NC_002687.1 + 239837 0.68 0.906313
Target:  5'- uGgUCCGGCCGCcgcGGCGGAUGcUGGc- -3'
miRNA:   3'- cCgAGGUCGGCGc--UCGCUUAC-ACCau -5'
10564 3' -57.1 NC_002687.1 + 184071 0.68 0.906313
Target:  5'- -aCUCCAGCUGCaGGCGGcgGUaGGUc -3'
miRNA:   3'- ccGAGGUCGGCGcUCGCUuaCA-CCAu -5'
10564 3' -57.1 NC_002687.1 + 34831 0.69 0.874379
Target:  5'- cGCccgUCUAGUCGCGAGUGAccgGUGGg- -3'
miRNA:   3'- cCG---AGGUCGGCGCUCGCUua-CACCau -5'
10564 3' -57.1 NC_002687.1 + 158750 0.7 0.845294
Target:  5'- aGGCcgCUgaaAGCCGCGGGCGAGgccGGUGc -3'
miRNA:   3'- -CCGa-GG---UCGGCGCUCGCUUacaCCAU- -5'
10564 3' -57.1 NC_002687.1 + 225071 0.7 0.837571
Target:  5'- gGGCUgCAGCCGgaGAG-GAAcGUGGUGg -3'
miRNA:   3'- -CCGAgGUCGGCg-CUCgCUUaCACCAU- -5'
10564 3' -57.1 NC_002687.1 + 309507 0.72 0.743005
Target:  5'- gGGCUCagGGUCGUGAGCGug-GUGGa- -3'
miRNA:   3'- -CCGAGg-UCGGCGCUCGCuuaCACCau -5'
10564 3' -57.1 NC_002687.1 + 331232 0.72 0.71494
Target:  5'- aGGCUgCUGGCCaGCGAGCGGGccugcUGUGGc- -3'
miRNA:   3'- -CCGA-GGUCGG-CGCUCGCUU-----ACACCau -5'
10564 3' -57.1 NC_002687.1 + 99202 0.73 0.676662
Target:  5'- uGGCUCCcacGCgGCGGGUGAGUaucccaucGUGGUGg -3'
miRNA:   3'- -CCGAGGu--CGgCGCUCGCUUA--------CACCAU- -5'
10564 3' -57.1 NC_002687.1 + 11428 0.75 0.579647
Target:  5'- cGCUCuCAGCaugGCGGGCGuuguGUGUGGUGc -3'
miRNA:   3'- cCGAG-GUCGg--CGCUCGCu---UACACCAU- -5'
10564 3' -57.1 NC_002687.1 + 292264 1.09 0.005109
Target:  5'- cGGCUCCAGCCGCGAGCGAAUGUGGUAc -3'
miRNA:   3'- -CCGAGGUCGGCGCUCGCUUACACCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.