Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10564 | 3' | -57.1 | NC_002687.1 | + | 203978 | 0.66 | 0.964543 |
Target: 5'- aGGCccagUCCGGCCGCGGuGUacaGAcgGaUGGUGu -3' miRNA: 3'- -CCG----AGGUCGGCGCU-CG---CUuaC-ACCAU- -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 184071 | 0.68 | 0.906313 |
Target: 5'- -aCUCCAGCUGCaGGCGGcgGUaGGUc -3' miRNA: 3'- ccGAGGUCGGCGcUCGCUuaCA-CCAu -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 239837 | 0.68 | 0.906313 |
Target: 5'- uGgUCCGGCCGCcgcGGCGGAUGcUGGc- -3' miRNA: 3'- cCgAGGUCGGCGc--UCGCUUAC-ACCau -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 226947 | 0.68 | 0.917621 |
Target: 5'- cGGCUCCgucGGCUGCcGGUGGugGUGUcGGUGg -3' miRNA: 3'- -CCGAGG---UCGGCGcUCGCU--UACA-CCAU- -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 312073 | 0.68 | 0.917621 |
Target: 5'- uGGCgCguGCUGUGAGCGccgcuugcacuGUGUGGUGc -3' miRNA: 3'- -CCGaGguCGGCGCUCGCu----------UACACCAU- -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 24822 | 0.67 | 0.922952 |
Target: 5'- uGCUCUuucGGCUGCcGGCGAGuuuUGUGGUc -3' miRNA: 3'- cCGAGG---UCGGCGcUCGCUU---ACACCAu -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 252977 | 0.67 | 0.932968 |
Target: 5'- gGGCUCgAGgguuuCCGCGAGCGAAgguuUGaUGGc- -3' miRNA: 3'- -CCGAGgUC-----GGCGCUCGCUU----AC-ACCau -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 225578 | 0.66 | 0.95042 |
Target: 5'- aGCUggGGCCG-GAGCGGGggGUGGUGc -3' miRNA: 3'- cCGAggUCGGCgCUCGCUUa-CACCAU- -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 299267 | 0.66 | 0.954256 |
Target: 5'- aGGacgUCCAGCgGCGGGCGAcgagGGUc -3' miRNA: 3'- -CCg--AGGUCGgCGCUCGCUuacaCCAu -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 34831 | 0.69 | 0.874379 |
Target: 5'- cGCccgUCUAGUCGCGAGUGAccgGUGGg- -3' miRNA: 3'- cCG---AGGUCGGCGCUCGCUua-CACCau -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 158750 | 0.7 | 0.845294 |
Target: 5'- aGGCcgCUgaaAGCCGCGGGCGAGgccGGUGc -3' miRNA: 3'- -CCGa-GG---UCGGCGCUCGCUUacaCCAU- -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 225071 | 0.7 | 0.837571 |
Target: 5'- gGGCUgCAGCCGgaGAG-GAAcGUGGUGg -3' miRNA: 3'- -CCGAgGUCGGCg-CUCgCUUaCACCAU- -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 292264 | 1.09 | 0.005109 |
Target: 5'- cGGCUCCAGCCGCGAGCGAAUGUGGUAc -3' miRNA: 3'- -CCGAGGUCGGCGCUCGCUUACACCAU- -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 159844 | 0.67 | 0.94212 |
Target: 5'- aGCUCCAGUCGUaAGCGAcaggagacuucAUGUcGGUc -3' miRNA: 3'- cCGAGGUCGGCGcUCGCU-----------UACA-CCAu -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 36203 | 0.67 | 0.928068 |
Target: 5'- aGGCcucgCCAcCCGUGGGC-AGUGUGGUu -3' miRNA: 3'- -CCGa---GGUcGGCGCUCGcUUACACCAu -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 309507 | 0.72 | 0.743005 |
Target: 5'- gGGCUCagGGUCGUGAGCGug-GUGGa- -3' miRNA: 3'- -CCGAGg-UCGGCGCUCGCuuaCACCau -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 331232 | 0.72 | 0.71494 |
Target: 5'- aGGCUgCUGGCCaGCGAGCGGGccugcUGUGGc- -3' miRNA: 3'- -CCGA-GGUCGG-CGCUCGCUU-----ACACCau -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 99202 | 0.73 | 0.676662 |
Target: 5'- uGGCUCCcacGCgGCGGGUGAGUaucccaucGUGGUGg -3' miRNA: 3'- -CCGAGGu--CGgCGCUCGCUUA--------CACCAU- -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 11428 | 0.75 | 0.579647 |
Target: 5'- cGCUCuCAGCaugGCGGGCGuuguGUGUGGUGc -3' miRNA: 3'- cCGAG-GUCGg--CGCUCGCu---UACACCAU- -5' |
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10564 | 3' | -57.1 | NC_002687.1 | + | 307652 | 0.66 | 0.961313 |
Target: 5'- uGGgaUCGGCgGCG-GUGGcgGUGGUGg -3' miRNA: 3'- -CCgaGGUCGgCGCuCGCUuaCACCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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