miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10564 5' -60.9 NC_002687.1 + 313383 0.66 0.851984
Target:  5'- -uUGCCGUGGCCGgUcgCGUGaCCGc -3'
miRNA:   3'- uuGCGGCGCCGGCgAaaGCACgGGUu -5'
10564 5' -60.9 NC_002687.1 + 205052 0.66 0.851984
Target:  5'- cGACGuuGCGGCacaugGUgacgucCGUGCCCAc -3'
miRNA:   3'- -UUGCggCGCCGg----CGaaa---GCACGGGUu -5'
10564 5' -60.9 NC_002687.1 + 167530 0.66 0.844502
Target:  5'- uGCGCCGCGGaaGCUUcgcggcaacgUCGgGCCUc- -3'
miRNA:   3'- uUGCGGCGCCggCGAA----------AGCaCGGGuu -5'
10564 5' -60.9 NC_002687.1 + 302891 0.66 0.844502
Target:  5'- aAugGCUGCGGgCGCUUggcCGUuuaGCCUAc -3'
miRNA:   3'- -UugCGGCGCCgGCGAAa--GCA---CGGGUu -5'
10564 5' -60.9 NC_002687.1 + 17652 0.66 0.836849
Target:  5'- aAGCGuuGCGGCCGCag-CGgcUGCUUGAa -3'
miRNA:   3'- -UUGCggCGCCGGCGaaaGC--ACGGGUU- -5'
10564 5' -60.9 NC_002687.1 + 200475 0.66 0.836849
Target:  5'- cGGCG-CGCGGCCGUcgUCGccgGCaCCAAc -3'
miRNA:   3'- -UUGCgGCGCCGGCGaaAGCa--CG-GGUU- -5'
10564 5' -60.9 NC_002687.1 + 157686 0.66 0.812929
Target:  5'- -uCGCCGUGGaCUGCUUcCGUGgCCu- -3'
miRNA:   3'- uuGCGGCGCC-GGCGAAaGCACgGGuu -5'
10564 5' -60.9 NC_002687.1 + 269562 0.67 0.787705
Target:  5'- -uUGCCGUaGGCCGCUgaggaaagccUCGUGCUCu- -3'
miRNA:   3'- uuGCGGCG-CCGGCGAa---------AGCACGGGuu -5'
10564 5' -60.9 NC_002687.1 + 261997 0.67 0.77904
Target:  5'- cACGCaGCGGCUGUcuguggcacaguUUUCGUGgCCAAg -3'
miRNA:   3'- uUGCGgCGCCGGCG------------AAAGCACgGGUU- -5'
10564 5' -60.9 NC_002687.1 + 12248 0.67 0.761368
Target:  5'- gGGCGUgaCGCGGCUGCgcagcgUUUCGUaauGCCCAc -3'
miRNA:   3'- -UUGCG--GCGCCGGCG------AAAGCA---CGGGUu -5'
10564 5' -60.9 NC_002687.1 + 135332 0.67 0.752377
Target:  5'- -uUGCCGUGGCCGCggUCGaGCacgaCGAa -3'
miRNA:   3'- uuGCGGCGCCGGCGaaAGCaCGg---GUU- -5'
10564 5' -60.9 NC_002687.1 + 291385 0.68 0.696732
Target:  5'- -cUGCUGCGGUCGCUgcu-UGCCCGGg -3'
miRNA:   3'- uuGCGGCGCCGGCGAaagcACGGGUU- -5'
10564 5' -60.9 NC_002687.1 + 298055 0.7 0.591335
Target:  5'- uAAgGCCGCGGCCGCcgccgcgcgCGUGCUUGGa -3'
miRNA:   3'- -UUgCGGCGCCGGCGaaa------GCACGGGUU- -5'
10564 5' -60.9 NC_002687.1 + 78053 0.72 0.506971
Target:  5'- -uCGCgGCGGCCGCaguucucgCGUGCUCGAg -3'
miRNA:   3'- uuGCGgCGCCGGCGaaa-----GCACGGGUU- -5'
10564 5' -60.9 NC_002687.1 + 170748 0.74 0.395506
Target:  5'- cGCGUCGCGcGCCGg-UUCGUGCCCc- -3'
miRNA:   3'- uUGCGGCGC-CGGCgaAAGCACGGGuu -5'
10564 5' -60.9 NC_002687.1 + 295166 0.75 0.348931
Target:  5'- cGGCGCCggugcguGCGGUCGuCUUUCGUGCgCCAAa -3'
miRNA:   3'- -UUGCGG-------CGCCGGC-GAAAGCACG-GGUU- -5'
10564 5' -60.9 NC_002687.1 + 298010 0.8 0.182528
Target:  5'- uGGCGagGCGGCCGCUUUCGUGCCa-- -3'
miRNA:   3'- -UUGCggCGCCGGCGAAAGCACGGguu -5'
10564 5' -60.9 NC_002687.1 + 292461 0.82 0.121205
Target:  5'- uGGCGagGCGGCCGCUuuUUCGUGCCCAAa -3'
miRNA:   3'- -UUGCggCGCCGGCGA--AAGCACGGGUU- -5'
10564 5' -60.9 NC_002687.1 + 292299 1.04 0.004417
Target:  5'- gAACGCCGCGGCCGCUUUCGUGCCCAAa -3'
miRNA:   3'- -UUGCGGCGCCGGCGAAAGCACGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.