miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10565 3' -53.1 NC_002687.1 + 332893 0.66 0.997773
Target:  5'- -gGGGACAAgaaCGCCaggGUGUGCUGCa- -3'
miRNA:   3'- uaUUUUGUUa--GCGGg--CACGCGGCGcc -5'
10565 3' -53.1 NC_002687.1 + 209975 0.66 0.997773
Target:  5'- gGUGGuGCAGauggUGCCCGUgGUGCCGgUGGu -3'
miRNA:   3'- -UAUUuUGUUa---GCGGGCA-CGCGGC-GCC- -5'
10565 3' -53.1 NC_002687.1 + 201955 0.66 0.997736
Target:  5'- -aAGAAUAGaguguguuuugguUCGCCUGUGUGCUG-GGu -3'
miRNA:   3'- uaUUUUGUU-------------AGCGGGCACGCGGCgCC- -5'
10565 3' -53.1 NC_002687.1 + 248715 0.66 0.99738
Target:  5'- ----uGCAAUCGCCaUGUaCGCCGCc- -3'
miRNA:   3'- uauuuUGUUAGCGG-GCAcGCGGCGcc -5'
10565 3' -53.1 NC_002687.1 + 96361 0.66 0.997118
Target:  5'- ------aGGUUGCUCGcgugcuuggugccgGCGCCGCGGa -3'
miRNA:   3'- uauuuugUUAGCGGGCa-------------CGCGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 252315 0.66 0.996784
Target:  5'- -gAAAACAAUCGagagguuaCCGUGgaugaugccgaggaCGCCGCGc -3'
miRNA:   3'- uaUUUUGUUAGCg-------GGCAC--------------GCGGCGCc -5'
10565 3' -53.1 NC_002687.1 + 209926 0.66 0.996419
Target:  5'- ---uGGCAGUggUGCCCGUG-GUgGCGGu -3'
miRNA:   3'- uauuUUGUUA--GCGGGCACgCGgCGCC- -5'
10565 3' -53.1 NC_002687.1 + 240554 0.66 0.996419
Target:  5'- uGUAAGACAuguUCGgCCGauCGCCGgGGu -3'
miRNA:   3'- -UAUUUUGUu--AGCgGGCacGCGGCgCC- -5'
10565 3' -53.1 NC_002687.1 + 11299 0.66 0.996419
Target:  5'- -cGGGACAGUUGCCgCGUucaaggagaucGCcucucugcugGCCGCGGu -3'
miRNA:   3'- uaUUUUGUUAGCGG-GCA-----------CG----------CGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 264028 0.66 0.99584
Target:  5'- ---cAugGAUUGCCCGUaaGCGCCaugaGCGa -3'
miRNA:   3'- uauuUugUUAGCGGGCA--CGCGG----CGCc -5'
10565 3' -53.1 NC_002687.1 + 182182 0.66 0.99584
Target:  5'- ----cGCAGUCGCacaagacaCCGUGCGaaaccuaUGCGGg -3'
miRNA:   3'- uauuuUGUUAGCG--------GGCACGCg------GCGCC- -5'
10565 3' -53.1 NC_002687.1 + 118175 0.66 0.99584
Target:  5'- ----uGCAGUCgcagaGCCCGUauGCGCCGUa- -3'
miRNA:   3'- uauuuUGUUAG-----CGGGCA--CGCGGCGcc -5'
10565 3' -53.1 NC_002687.1 + 148551 0.67 0.995457
Target:  5'- --cGGACg--CGCCCGgcaagucccuuaccGCGUCGCGGa -3'
miRNA:   3'- uauUUUGuuaGCGGGCa-------------CGCGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 295526 0.67 0.995187
Target:  5'- -aAAGACGAcCGCacgcaccggcgCCGUGUGCUGCaGGa -3'
miRNA:   3'- uaUUUUGUUaGCG-----------GGCACGCGGCG-CC- -5'
10565 3' -53.1 NC_002687.1 + 309705 0.67 0.995187
Target:  5'- -cGAuGCGGUCGCUCaUGCGCCGg-- -3'
miRNA:   3'- uaUUuUGUUAGCGGGcACGCGGCgcc -5'
10565 3' -53.1 NC_002687.1 + 56863 0.67 0.993629
Target:  5'- ---cAGC-AUCGCCugcgCGUGUauGCCGCGGc -3'
miRNA:   3'- uauuUUGuUAGCGG----GCACG--CGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 308324 0.67 0.993629
Target:  5'- ----uGCGuUCGaCCCGUGUGUcucuCGCGGg -3'
miRNA:   3'- uauuuUGUuAGC-GGGCACGCG----GCGCC- -5'
10565 3' -53.1 NC_002687.1 + 43475 0.67 0.993629
Target:  5'- -aGAGAUAAgaCGUCUGUGCGCCGaCa- -3'
miRNA:   3'- uaUUUUGUUa-GCGGGCACGCGGC-Gcc -5'
10565 3' -53.1 NC_002687.1 + 298035 0.67 0.992711
Target:  5'- -aAGAACAAgCGCCCaauUGauaagGCCGCGGc -3'
miRNA:   3'- uaUUUUGUUaGCGGGc--ACg----CGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 252712 0.67 0.99169
Target:  5'- -gAAuuCGAUCGgCCGUcGCGCgGCGu -3'
miRNA:   3'- uaUUuuGUUAGCgGGCA-CGCGgCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.