miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10565 3' -53.1 NC_002687.1 + 292417 1.08 0.013993
Target:  5'- cAUAAAACAAUCGCCCGUGCGCCGCGGc -3'
miRNA:   3'- -UAUUUUGUUAGCGGGCACGCGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 111117 0.79 0.612813
Target:  5'- ----cACAGUCGCCUGUGCGUgGCGu -3'
miRNA:   3'- uauuuUGUUAGCGGGCACGCGgCGCc -5'
10565 3' -53.1 NC_002687.1 + 10901 0.77 0.7201
Target:  5'- ---cGGCGAUCGCCCGaGCGagaacguCCGCGGg -3'
miRNA:   3'- uauuUUGUUAGCGGGCaCGC-------GGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 260022 0.76 0.749532
Target:  5'- uGUGAAGCGugagAUUGUCCgGUGgGCCGCGGu -3'
miRNA:   3'- -UAUUUUGU----UAGCGGG-CACgCGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 297969 0.74 0.844774
Target:  5'- --cAAACAAaCGCCCuUGCGuuGCGGc -3'
miRNA:   3'- uauUUUGUUaGCGGGcACGCggCGCC- -5'
10565 3' -53.1 NC_002687.1 + 57343 0.73 0.888115
Target:  5'- --cGGGCGGU-GUCCGUGCGCCGCc- -3'
miRNA:   3'- uauUUUGUUAgCGGGCACGCGGCGcc -5'
10565 3' -53.1 NC_002687.1 + 298351 0.73 0.894621
Target:  5'- gAUGAAugGG-CGCCuugCGUGUGCCGCGa -3'
miRNA:   3'- -UAUUUugUUaGCGG---GCACGCGGCGCc -5'
10565 3' -53.1 NC_002687.1 + 267835 0.71 0.933996
Target:  5'- --cAGGCGGUCGUCUGUGgaGCgCGCGGu -3'
miRNA:   3'- uauUUUGUUAGCGGGCACg-CG-GCGCC- -5'
10565 3' -53.1 NC_002687.1 + 99908 0.71 0.947515
Target:  5'- -----uCGAUCGCgCGaGCGCCGCGa -3'
miRNA:   3'- uauuuuGUUAGCGgGCaCGCGGCGCc -5'
10565 3' -53.1 NC_002687.1 + 138253 0.7 0.95158
Target:  5'- gAUGGAAgAAagGCCCGUGCGuCCGUu- -3'
miRNA:   3'- -UAUUUUgUUagCGGGCACGC-GGCGcc -5'
10565 3' -53.1 NC_002687.1 + 298421 0.7 0.959064
Target:  5'- --cAAGCAcgCGCgCGgcgGCgGCCGCGGc -3'
miRNA:   3'- uauUUUGUuaGCGgGCa--CG-CGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 114286 0.7 0.965712
Target:  5'- ----cGCGAUCGCCgGaaGCGCCGCu- -3'
miRNA:   3'- uauuuUGUUAGCGGgCa-CGCGGCGcc -5'
10565 3' -53.1 NC_002687.1 + 311559 0.7 0.968734
Target:  5'- ----uACAGUaUGUCaCGUGCGCaCGCGGg -3'
miRNA:   3'- uauuuUGUUA-GCGG-GCACGCG-GCGCC- -5'
10565 3' -53.1 NC_002687.1 + 167509 0.69 0.9742
Target:  5'- cGUAGGcGCGGUgUGaUCCGuUGCGCCGCGGa -3'
miRNA:   3'- -UAUUU-UGUUA-GC-GGGC-ACGCGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 141601 0.69 0.976656
Target:  5'- -cAGGACGucgacgCGgCCGUGCuCCGCGGc -3'
miRNA:   3'- uaUUUUGUua----GCgGGCACGcGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 312820 0.69 0.976656
Target:  5'- -cGAuuCGAUaCGgCCGU-CGCCGCGGa -3'
miRNA:   3'- uaUUuuGUUA-GCgGGCAcGCGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 131583 0.69 0.976656
Target:  5'- --uGAACAacauGUCGaauCCGUGCGCCGauuCGGg -3'
miRNA:   3'- uauUUUGU----UAGCg--GGCACGCGGC---GCC- -5'
10565 3' -53.1 NC_002687.1 + 225331 0.69 0.978936
Target:  5'- gGUAGGAUggUUGCCCGgaUGgGUCGCa- -3'
miRNA:   3'- -UAUUUUGuuAGCGGGC--ACgCGGCGcc -5'
10565 3' -53.1 NC_002687.1 + 298731 0.68 0.982995
Target:  5'- -cAAAGCAca-GCUCGaGCGUCGCGGc -3'
miRNA:   3'- uaUUUUGUuagCGGGCaCGCGGCGCC- -5'
10565 3' -53.1 NC_002687.1 + 63034 0.68 0.982995
Target:  5'- -cGAGACAagaAUCgGCCCG-GCgugcuuggugGCCGCGGu -3'
miRNA:   3'- uaUUUUGU---UAG-CGGGCaCG----------CGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.