Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10565 | 3' | -53.1 | NC_002687.1 | + | 135339 | 0.67 | 0.99169 |
Target: 5'- -aGAGAC-GUUG-CCGUG-GCCGCGGu -3' miRNA: 3'- uaUUUUGuUAGCgGGCACgCGGCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 252712 | 0.67 | 0.99169 |
Target: 5'- -gAAuuCGAUCGgCCGUcGCGCgGCGu -3' miRNA: 3'- uaUUuuGUUAGCgGGCA-CGCGgCGCc -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 180571 | 0.67 | 0.99056 |
Target: 5'- gAUGAGugGuUCGUCCGUcucguaaccGUGCCGuCGGa -3' miRNA: 3'- -UAUUUugUuAGCGGGCA---------CGCGGC-GCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 204684 | 0.68 | 0.989312 |
Target: 5'- -gGAGGCGgaaauGUCGCCCGUGaGUC-CGGa -3' miRNA: 3'- uaUUUUGU-----UAGCGGGCACgCGGcGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 279154 | 0.68 | 0.989312 |
Target: 5'- cUGGGGCAGgaaaaaGCgCGUGCGCaGCGGc -3' miRNA: 3'- uAUUUUGUUag----CGgGCACGCGgCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 259612 | 0.68 | 0.986434 |
Target: 5'- -----cCGAUC-CUCGUGgGCCGUGGa -3' miRNA: 3'- uauuuuGUUAGcGGGCACgCGGCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 298731 | 0.68 | 0.982995 |
Target: 5'- -cAAAGCAca-GCUCGaGCGUCGCGGc -3' miRNA: 3'- uaUUUUGUuagCGGGCaCGCGGCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 63034 | 0.68 | 0.982995 |
Target: 5'- -cGAGACAagaAUCgGCCCG-GCgugcuuggugGCCGCGGu -3' miRNA: 3'- uaUUUUGU---UAG-CGGGCaCG----------CGGCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 99542 | 0.68 | 0.982995 |
Target: 5'- -cAAGGCGGUCGUCgCG-GCGCuCGCGc -3' miRNA: 3'- uaUUUUGUUAGCGG-GCaCGCG-GCGCc -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 225331 | 0.69 | 0.978936 |
Target: 5'- gGUAGGAUggUUGCCCGgaUGgGUCGCa- -3' miRNA: 3'- -UAUUUUGuuAGCGGGC--ACgCGGCGcc -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 312820 | 0.69 | 0.976656 |
Target: 5'- -cGAuuCGAUaCGgCCGU-CGCCGCGGa -3' miRNA: 3'- uaUUuuGUUA-GCgGGCAcGCGGCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 131583 | 0.69 | 0.976656 |
Target: 5'- --uGAACAacauGUCGaauCCGUGCGCCGauuCGGg -3' miRNA: 3'- uauUUUGU----UAGCg--GGCACGCGGC---GCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 141601 | 0.69 | 0.976656 |
Target: 5'- -cAGGACGucgacgCGgCCGUGCuCCGCGGc -3' miRNA: 3'- uaUUUUGUua----GCgGGCACGcGGCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 167509 | 0.69 | 0.9742 |
Target: 5'- cGUAGGcGCGGUgUGaUCCGuUGCGCCGCGGa -3' miRNA: 3'- -UAUUU-UGUUA-GC-GGGC-ACGCGGCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 311559 | 0.7 | 0.968734 |
Target: 5'- ----uACAGUaUGUCaCGUGCGCaCGCGGg -3' miRNA: 3'- uauuuUGUUA-GCGG-GCACGCG-GCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 114286 | 0.7 | 0.965712 |
Target: 5'- ----cGCGAUCGCCgGaaGCGCCGCu- -3' miRNA: 3'- uauuuUGUUAGCGGgCa-CGCGGCGcc -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 298421 | 0.7 | 0.959064 |
Target: 5'- --cAAGCAcgCGCgCGgcgGCgGCCGCGGc -3' miRNA: 3'- uauUUUGUuaGCGgGCa--CG-CGGCGCC- -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 138253 | 0.7 | 0.95158 |
Target: 5'- gAUGGAAgAAagGCCCGUGCGuCCGUu- -3' miRNA: 3'- -UAUUUUgUUagCGGGCACGC-GGCGcc -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 99908 | 0.71 | 0.947515 |
Target: 5'- -----uCGAUCGCgCGaGCGCCGCGa -3' miRNA: 3'- uauuuuGUUAGCGgGCaCGCGGCGCc -5' |
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10565 | 3' | -53.1 | NC_002687.1 | + | 267835 | 0.71 | 0.933996 |
Target: 5'- --cAGGCGGUCGUCUGUGgaGCgCGCGGu -3' miRNA: 3'- uauUUUGUUAGCGGGCACg-CG-GCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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