miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10565 5' -58 NC_002687.1 + 226217 0.66 0.931749
Target:  5'- --aCAGgggggUGGCGuGGGCGGCCGg---- -3'
miRNA:   3'- aagGUCa----ACCGC-UCCGCCGGCgaaaa -5'
10565 5' -58 NC_002687.1 + 225659 0.66 0.931749
Target:  5'- --aCAGgggggUGGCGuGGGCGGCCGg---- -3'
miRNA:   3'- aagGUCa----ACCGC-UCCGCCGGCgaaaa -5'
10565 5' -58 NC_002687.1 + 226811 0.66 0.910326
Target:  5'- -gCCGG-UGGCGGuGGCGGUgGCg--- -3'
miRNA:   3'- aaGGUCaACCGCU-CCGCCGgCGaaaa -5'
10565 5' -58 NC_002687.1 + 308422 0.66 0.904418
Target:  5'- -cCCGGcgaccccGGCGGGGCGGgCGCg--- -3'
miRNA:   3'- aaGGUCaa-----CCGCUCCGCCgGCGaaaa -5'
10565 5' -58 NC_002687.1 + 48773 0.67 0.898294
Target:  5'- -gCCAGcuucUGGCuAGGUGGCCGUUg-- -3'
miRNA:   3'- aaGGUCa---ACCGcUCCGCCGGCGAaaa -5'
10565 5' -58 NC_002687.1 + 298348 0.68 0.849615
Target:  5'- -gCCAGUcggaaGCGGuGGCGGCCGCa--- -3'
miRNA:   3'- aaGGUCAac---CGCU-CCGCCGGCGaaaa -5'
10565 5' -58 NC_002687.1 + 69031 0.69 0.809266
Target:  5'- -aCCAauGUUGGCGAuGGUGGCgGCg--- -3'
miRNA:   3'- aaGGU--CAACCGCU-CCGCCGgCGaaaa -5'
10565 5' -58 NC_002687.1 + 227482 0.69 0.80072
Target:  5'- gUCCG--UGG-GAGGUGGCCGCUc-- -3'
miRNA:   3'- aAGGUcaACCgCUCCGCCGGCGAaaa -5'
10565 5' -58 NC_002687.1 + 295808 0.73 0.590128
Target:  5'- cUUCCGGUUGGagGGGGUGGCCaucucgcGCUUUUu -3'
miRNA:   3'- -AAGGUCAACCg-CUCCGCCGG-------CGAAAA- -5'
10565 5' -58 NC_002687.1 + 270561 0.76 0.415705
Target:  5'- aUCCAGguugccGGCGAGGuCGGCCGCc--- -3'
miRNA:   3'- aAGGUCaa----CCGCUCC-GCCGGCGaaaa -5'
10565 5' -58 NC_002687.1 + 298002 0.85 0.121694
Target:  5'- cUUCCGacUGGCGAGGCGGCCGCUUUc -3'
miRNA:   3'- -AAGGUcaACCGCUCCGCCGGCGAAAa -5'
10565 5' -58 NC_002687.1 + 292453 1.02 0.009087
Target:  5'- cUUCCAGUUGGCGAGGCGGCCGCUUUUu -3'
miRNA:   3'- -AAGGUCAACCGCUCCGCCGGCGAAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.