miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10566 3' -54.3 NC_002687.1 + 21173 0.66 0.995013
Target:  5'- cGUGuuguGCCCCUUaCCGGCAGcAAGGu- -3'
miRNA:   3'- -CGCugu-CGGGGAA-GGCCGUU-UUCUgc -5'
10566 3' -54.3 NC_002687.1 + 291672 0.66 0.995013
Target:  5'- aCGACAGCCUCg--CGGCcgcuGGGCa -3'
miRNA:   3'- cGCUGUCGGGGaagGCCGuuu-UCUGc -5'
10566 3' -54.3 NC_002687.1 + 85367 0.66 0.995013
Target:  5'- gGCGGguGCCaccggCCUUUCGcagaccGCGGGGGACGg -3'
miRNA:   3'- -CGCUguCGG-----GGAAGGC------CGUUUUCUGC- -5'
10566 3' -54.3 NC_002687.1 + 297349 0.66 0.994267
Target:  5'- gGCGcucCGGCCCCauccCCGGCGGuuGuCGg -3'
miRNA:   3'- -CGCu--GUCGGGGaa--GGCCGUUuuCuGC- -5'
10566 3' -54.3 NC_002687.1 + 296911 0.66 0.994267
Target:  5'- aGCGAC-GCCCCga-CGGCcaucGAGAUc -3'
miRNA:   3'- -CGCUGuCGGGGaagGCCGuu--UUCUGc -5'
10566 3' -54.3 NC_002687.1 + 20789 0.66 0.994027
Target:  5'- aCGACGGUcgcuaugccauacaCCUUgcugCCGGUAAGGGGCa -3'
miRNA:   3'- cGCUGUCG--------------GGGAa---GGCCGUUUUCUGc -5'
10566 3' -54.3 NC_002687.1 + 214819 0.66 0.993434
Target:  5'- uGCGAC-GCU---UCCGGCGcgGAGGACGc -3'
miRNA:   3'- -CGCUGuCGGggaAGGCCGU--UUUCUGC- -5'
10566 3' -54.3 NC_002687.1 + 85793 0.66 0.993434
Target:  5'- cCGGCGGCCCCUUa-GGacccuGAGGGCc -3'
miRNA:   3'- cGCUGUCGGGGAAggCCgu---UUUCUGc -5'
10566 3' -54.3 NC_002687.1 + 201823 0.66 0.993434
Target:  5'- cGUGGauuuGUCCCUacUCCGGCGAAGcaacGACa -3'
miRNA:   3'- -CGCUgu--CGGGGA--AGGCCGUUUU----CUGc -5'
10566 3' -54.3 NC_002687.1 + 261321 0.66 0.991478
Target:  5'- gGCGGCGGCaaCggcaUGGCGAAGGGCu -3'
miRNA:   3'- -CGCUGUCGggGaag-GCCGUUUUCUGc -5'
10566 3' -54.3 NC_002687.1 + 102780 0.66 0.991478
Target:  5'- gGCGACAGCgaCagCaCGGCG-AAGACGa -3'
miRNA:   3'- -CGCUGUCGggGaaG-GCCGUuUUCUGC- -5'
10566 3' -54.3 NC_002687.1 + 7929 0.67 0.990341
Target:  5'- aGCgGACAuaCCCCUUCaaacgacgacggUGGCGGAAGGCa -3'
miRNA:   3'- -CG-CUGUc-GGGGAAG------------GCCGUUUUCUGc -5'
10566 3' -54.3 NC_002687.1 + 270198 0.67 0.987712
Target:  5'- -aGGCGGCCgaCCUcgCCGGCAAccuGGAUa -3'
miRNA:   3'- cgCUGUCGG--GGAa-GGCCGUUu--UCUGc -5'
10566 3' -54.3 NC_002687.1 + 225416 0.67 0.986825
Target:  5'- gGCuGCAGCCCCagcugCCGGCAcAGucgucuccuugucucGGACGc -3'
miRNA:   3'- -CGcUGUCGGGGaa---GGCCGU-UU---------------UCUGC- -5'
10566 3' -54.3 NC_002687.1 + 233383 0.67 0.986206
Target:  5'- uCGACAGCaUCCgcaagUCCGGUAuuaugaucGAGGGCa -3'
miRNA:   3'- cGCUGUCG-GGGa----AGGCCGU--------UUUCUGc -5'
10566 3' -54.3 NC_002687.1 + 57887 0.67 0.986206
Target:  5'- aGUGACuGUCCCUcgcCCGGgucgcgUAAGGGACGg -3'
miRNA:   3'- -CGCUGuCGGGGAa--GGCC------GUUUUCUGC- -5'
10566 3' -54.3 NC_002687.1 + 170453 0.67 0.986206
Target:  5'- cCGACAGCCCggugUUCGGUAacGAGGuCGa -3'
miRNA:   3'- cGCUGUCGGGga--AGGCCGU--UUUCuGC- -5'
10566 3' -54.3 NC_002687.1 + 161761 0.67 0.984562
Target:  5'- uCGACAGUUCCgacgaCGGCAuuGAGACu -3'
miRNA:   3'- cGCUGUCGGGGaag--GCCGUu-UUCUGc -5'
10566 3' -54.3 NC_002687.1 + 292948 0.67 0.984562
Target:  5'- --aACAGCaguCCUUCUGGCAAAAGcCa -3'
miRNA:   3'- cgcUGUCGg--GGAAGGCCGUUUUCuGc -5'
10566 3' -54.3 NC_002687.1 + 106492 0.67 0.982773
Target:  5'- aGCGAgGuuuGCUCUaUCgGGCAAGAGACu -3'
miRNA:   3'- -CGCUgU---CGGGGaAGgCCGUUUUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.