miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10566 3' -54.3 NC_002687.1 + 292965 1.11 0.007141
Target:  5'- gGCGACAGCCCCUUCCGGCAAAAGACGa -3'
miRNA:   3'- -CGCUGUCGGGGAAGGCCGUUUUCUGC- -5'
10566 3' -54.3 NC_002687.1 + 56266 0.74 0.780349
Target:  5'- uGCGACGGCaCCCUcgugCUuguuGCAAGAGACGg -3'
miRNA:   3'- -CGCUGUCG-GGGAa---GGc---CGUUUUCUGC- -5'
10566 3' -54.3 NC_002687.1 + 200193 0.73 0.823009
Target:  5'- uUGACAuGCUCCUUgCGGCGGAGGcCGg -3'
miRNA:   3'- cGCUGU-CGGGGAAgGCCGUUUUCuGC- -5'
10566 3' -54.3 NC_002687.1 + 88542 0.73 0.831093
Target:  5'- uGCGGCAGCCCCgauaCUGGCGAGc---- -3'
miRNA:   3'- -CGCUGUCGGGGaa--GGCCGUUUucugc -5'
10566 3' -54.3 NC_002687.1 + 105913 0.72 0.861704
Target:  5'- -gGACAGCCCCUg-CGGCAAcaagcgcaagaGGGAUGc -3'
miRNA:   3'- cgCUGUCGGGGAagGCCGUU-----------UUCUGC- -5'
10566 3' -54.3 NC_002687.1 + 316175 0.72 0.868897
Target:  5'- gGCGGCGGCaCCCggCgCGGCGGAAaaagcauccGACGa -3'
miRNA:   3'- -CGCUGUCG-GGGaaG-GCCGUUUU---------CUGC- -5'
10566 3' -54.3 NC_002687.1 + 284661 0.72 0.875894
Target:  5'- gGCG-CAGCCCCUggugcugCCGGaaAAAAGACc -3'
miRNA:   3'- -CGCuGUCGGGGAa------GGCCg-UUUUCUGc -5'
10566 3' -54.3 NC_002687.1 + 223847 0.72 0.875894
Target:  5'- uCGACGGCCaagUCaCGGCAAAAGuACGa -3'
miRNA:   3'- cGCUGUCGGggaAG-GCCGUUUUC-UGC- -5'
10566 3' -54.3 NC_002687.1 + 23717 0.72 0.875894
Target:  5'- cCGAC-GCCCC-UCCGGCAucgcuGGCGc -3'
miRNA:   3'- cGCUGuCGGGGaAGGCCGUuuu--CUGC- -5'
10566 3' -54.3 NC_002687.1 + 166640 0.71 0.924394
Target:  5'- cGCGcCGGCcgugcucaCCCUcUCGGCAGAAGACc -3'
miRNA:   3'- -CGCuGUCG--------GGGAaGGCCGUUUUCUGc -5'
10566 3' -54.3 NC_002687.1 + 160196 0.7 0.929485
Target:  5'- cGUGAUGGgCCCgaagUCCGcCGGAGGACGa -3'
miRNA:   3'- -CGCUGUCgGGGa---AGGCcGUUUUCUGC- -5'
10566 3' -54.3 NC_002687.1 + 41674 0.7 0.93901
Target:  5'- uGCGGCucgcGCUUC-UCCGGCAAAAGcCGu -3'
miRNA:   3'- -CGCUGu---CGGGGaAGGCCGUUUUCuGC- -5'
10566 3' -54.3 NC_002687.1 + 291922 0.7 0.93901
Target:  5'- --cACAGCCCCaa-CGGCAGAGGAg- -3'
miRNA:   3'- cgcUGUCGGGGaagGCCGUUUUCUgc -5'
10566 3' -54.3 NC_002687.1 + 123437 0.7 0.943446
Target:  5'- aCGAcCAGCCCUUUCaaGGCAGAGGcauacGCGg -3'
miRNA:   3'- cGCU-GUCGGGGAAGg-CCGUUUUC-----UGC- -5'
10566 3' -54.3 NC_002687.1 + 323505 0.7 0.947666
Target:  5'- cGCGcCGGCaucuCUCUUUCGGCAAgguGAGGCGu -3'
miRNA:   3'- -CGCuGUCG----GGGAAGGCCGUU---UUCUGC- -5'
10566 3' -54.3 NC_002687.1 + 265079 0.69 0.955468
Target:  5'- uGUGACAGUCUCUUCCuGGCGuuGAAuGCa -3'
miRNA:   3'- -CGCUGUCGGGGAAGG-CCGU--UUUcUGc -5'
10566 3' -54.3 NC_002687.1 + 241864 0.69 0.955468
Target:  5'- gGUGGCGGCgugaCUUUCGGCAcAGGACa -3'
miRNA:   3'- -CGCUGUCGgg--GAAGGCCGUuUUCUGc -5'
10566 3' -54.3 NC_002687.1 + 304850 0.69 0.955468
Target:  5'- cCGAUAGCCUCUgcccgUCCGGUGccAGugGa -3'
miRNA:   3'- cGCUGUCGGGGA-----AGGCCGUuuUCugC- -5'
10566 3' -54.3 NC_002687.1 + 32063 0.69 0.959055
Target:  5'- aGCGACcGCgCCCaUCUGuGCGGGAGAgGg -3'
miRNA:   3'- -CGCUGuCG-GGGaAGGC-CGUUUUCUgC- -5'
10566 3' -54.3 NC_002687.1 + 29132 0.69 0.96244
Target:  5'- gGUGuuguCAGCCCCgaUCCGGCGAccggguGugGa -3'
miRNA:   3'- -CGCu---GUCGGGGa-AGGCCGUUuu----CugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.