Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10566 | 5' | -58.8 | NC_002687.1 | + | 58474 | 0.66 | 0.94104 |
Target: 5'- gGCGCGCUCgGCCGcccucGACuCUGgUCGu -3' miRNA: 3'- gCGCGCGAGaCGGCua---CUGuGAC-GGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 35815 | 0.66 | 0.936608 |
Target: 5'- gGCGgGCaUCUGCCGAUG-CGgUGauaCGu -3' miRNA: 3'- gCGCgCG-AGACGGCUACuGUgACg--GC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 307380 | 0.66 | 0.936608 |
Target: 5'- gGCGC-CUC-GCCGAUGGcCAUgGCCu -3' miRNA: 3'- gCGCGcGAGaCGGCUACU-GUGaCGGc -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 239239 | 0.66 | 0.936608 |
Target: 5'- gGCGUGCUCUGuuGA-GACGg-GCUc -3' miRNA: 3'- gCGCGCGAGACggCUaCUGUgaCGGc -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 293343 | 0.66 | 0.930538 |
Target: 5'- gCGCGCGCagcugauuucgucuUUUGCCGGaaGGgGCUGUCGc -3' miRNA: 3'- -GCGCGCG--------------AGACGGCUa-CUgUGACGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 96368 | 0.66 | 0.92207 |
Target: 5'- uCGCGUGCUUggUGCCGgcGcCGCggaugaaaggugUGCCGa -3' miRNA: 3'- -GCGCGCGAG--ACGGCuaCuGUG------------ACGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 28626 | 0.67 | 0.905667 |
Target: 5'- gGCagGUGCUCggcgGCCGGUGucauuaucaccGCAUUGCUGg -3' miRNA: 3'- gCG--CGCGAGa---CGGCUAC-----------UGUGACGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 277395 | 0.67 | 0.905667 |
Target: 5'- cCGCGCuGCUaCUGCUGccGA-GCUGCUGa -3' miRNA: 3'- -GCGCG-CGA-GACGGCuaCUgUGACGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 313010 | 0.67 | 0.887433 |
Target: 5'- uCGCGUGaccaCUGCCGAaaacgcaauUGAUGCUGUCa -3' miRNA: 3'- -GCGCGCga--GACGGCU---------ACUGUGACGGc -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 283552 | 0.67 | 0.886794 |
Target: 5'- cCGCGCcugguGCUgccgccccuguugCUGCCGcuucgGAUGCUGCCGa -3' miRNA: 3'- -GCGCG-----CGA-------------GACGGCua---CUGUGACGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 256958 | 0.67 | 0.886794 |
Target: 5'- gCGCGUgcacguaaucGCUCUGUCGAagucggcggcgaaUGccGCAUUGCCGa -3' miRNA: 3'- -GCGCG----------CGAGACGGCU-------------AC--UGUGACGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 200285 | 0.68 | 0.874293 |
Target: 5'- uGuCGCGCUCUGuuGAgccACugUGCgGa -3' miRNA: 3'- gC-GCGCGAGACggCUac-UGugACGgC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 249959 | 0.68 | 0.860401 |
Target: 5'- uGCGuCGUUCUGuuCCGGUgguacaGAgGCUGCCGa -3' miRNA: 3'- gCGC-GCGAGAC--GGCUA------CUgUGACGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 159359 | 0.68 | 0.860401 |
Target: 5'- gCGCuGUGCUCgGCCcucuccagGAUGGCACaaGCCGa -3' miRNA: 3'- -GCG-CGCGAGaCGG--------CUACUGUGa-CGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 211004 | 0.68 | 0.860401 |
Target: 5'- aGcCGCGCUCU-CCGuaggGACAUagUGCCGu -3' miRNA: 3'- gC-GCGCGAGAcGGCua--CUGUG--ACGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 200587 | 0.68 | 0.853184 |
Target: 5'- cCGCGCGgUCgucgggGCCGGaaucuuUGGCACcgGCCu -3' miRNA: 3'- -GCGCGCgAGa-----CGGCU------ACUGUGa-CGGc -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 134723 | 0.68 | 0.845792 |
Target: 5'- uCGCGCG-UUUGCCGAUcuuaacGCGCUGCaCGu -3' miRNA: 3'- -GCGCGCgAGACGGCUAc-----UGUGACG-GC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 10716 | 0.69 | 0.838233 |
Target: 5'- cCGCaGCcaCUCcGCCuucgGAUGACACUGCCa -3' miRNA: 3'- -GCG-CGc-GAGaCGG----CUACUGUGACGGc -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 158763 | 0.69 | 0.83051 |
Target: 5'- cCGCGgGCgagGCCGGUGcaACACUagucGCCGa -3' miRNA: 3'- -GCGCgCGagaCGGCUAC--UGUGA----CGGC- -5' |
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10566 | 5' | -58.8 | NC_002687.1 | + | 85733 | 0.69 | 0.81379 |
Target: 5'- -cCGCGgUCUgcgaaagGCCGGUGGCACccGCCGg -3' miRNA: 3'- gcGCGCgAGA-------CGGCUACUGUGa-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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