miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10566 5' -58.8 NC_002687.1 + 293001 1.09 0.003696
Target:  5'- gCGCGCGCUCUGCCGAUGACACUGCCGg -3'
miRNA:   3'- -GCGCGCGAGACGGCUACUGUGACGGC- -5'
10566 5' -58.8 NC_002687.1 + 256249 0.73 0.623768
Target:  5'- uGCGCuuGCUCUGCCGAaaugucUGuCAgUGCCa -3'
miRNA:   3'- gCGCG--CGAGACGGCU------ACuGUgACGGc -5'
10566 5' -58.8 NC_002687.1 + 224258 0.72 0.661896
Target:  5'- gGCGaUGCUaCUGCCGAUGcCGaUGCCGa -3'
miRNA:   3'- gCGC-GCGA-GACGGCUACuGUgACGGC- -5'
10566 5' -58.8 NC_002687.1 + 242333 0.71 0.709032
Target:  5'- gGCGUGCUCgGCCGAUaACACguacCCGa -3'
miRNA:   3'- gCGCGCGAGaCGGCUAcUGUGac--GGC- -5'
10566 5' -58.8 NC_002687.1 + 67904 0.71 0.709032
Target:  5'- aCGCGCGCaUCUgGCCGuacaaGCAUUGCCu -3'
miRNA:   3'- -GCGCGCG-AGA-CGGCuac--UGUGACGGc -5'
10566 5' -58.8 NC_002687.1 + 243795 0.71 0.727541
Target:  5'- uCGUgGUGCUCgauggcugcGCCGAUGACAaggaUGCCGu -3'
miRNA:   3'- -GCG-CGCGAGa--------CGGCUACUGUg---ACGGC- -5'
10566 5' -58.8 NC_002687.1 + 85733 0.69 0.81379
Target:  5'- -cCGCGgUCUgcgaaagGCCGGUGGCACccGCCGg -3'
miRNA:   3'- gcGCGCgAGA-------CGGCUACUGUGa-CGGC- -5'
10566 5' -58.8 NC_002687.1 + 158763 0.69 0.83051
Target:  5'- cCGCGgGCgagGCCGGUGcaACACUagucGCCGa -3'
miRNA:   3'- -GCGCgCGagaCGGCUAC--UGUGA----CGGC- -5'
10566 5' -58.8 NC_002687.1 + 10716 0.69 0.838233
Target:  5'- cCGCaGCcaCUCcGCCuucgGAUGACACUGCCa -3'
miRNA:   3'- -GCG-CGc-GAGaCGG----CUACUGUGACGGc -5'
10566 5' -58.8 NC_002687.1 + 134723 0.68 0.845792
Target:  5'- uCGCGCG-UUUGCCGAUcuuaacGCGCUGCaCGu -3'
miRNA:   3'- -GCGCGCgAGACGGCUAc-----UGUGACG-GC- -5'
10566 5' -58.8 NC_002687.1 + 200587 0.68 0.853184
Target:  5'- cCGCGCGgUCgucgggGCCGGaaucuuUGGCACcgGCCu -3'
miRNA:   3'- -GCGCGCgAGa-----CGGCU------ACUGUGa-CGGc -5'
10566 5' -58.8 NC_002687.1 + 159359 0.68 0.860401
Target:  5'- gCGCuGUGCUCgGCCcucuccagGAUGGCACaaGCCGa -3'
miRNA:   3'- -GCG-CGCGAGaCGG--------CUACUGUGa-CGGC- -5'
10566 5' -58.8 NC_002687.1 + 211004 0.68 0.860401
Target:  5'- aGcCGCGCUCU-CCGuaggGACAUagUGCCGu -3'
miRNA:   3'- gC-GCGCGAGAcGGCua--CUGUG--ACGGC- -5'
10566 5' -58.8 NC_002687.1 + 249959 0.68 0.860401
Target:  5'- uGCGuCGUUCUGuuCCGGUgguacaGAgGCUGCCGa -3'
miRNA:   3'- gCGC-GCGAGAC--GGCUA------CUgUGACGGC- -5'
10566 5' -58.8 NC_002687.1 + 200285 0.68 0.874293
Target:  5'- uGuCGCGCUCUGuuGAgccACugUGCgGa -3'
miRNA:   3'- gC-GCGCGAGACggCUac-UGugACGgC- -5'
10566 5' -58.8 NC_002687.1 + 256958 0.67 0.886794
Target:  5'- gCGCGUgcacguaaucGCUCUGUCGAagucggcggcgaaUGccGCAUUGCCGa -3'
miRNA:   3'- -GCGCG----------CGAGACGGCU-------------AC--UGUGACGGC- -5'
10566 5' -58.8 NC_002687.1 + 283552 0.67 0.886794
Target:  5'- cCGCGCcugguGCUgccgccccuguugCUGCCGcuucgGAUGCUGCCGa -3'
miRNA:   3'- -GCGCG-----CGA-------------GACGGCua---CUGUGACGGC- -5'
10566 5' -58.8 NC_002687.1 + 313010 0.67 0.887433
Target:  5'- uCGCGUGaccaCUGCCGAaaacgcaauUGAUGCUGUCa -3'
miRNA:   3'- -GCGCGCga--GACGGCU---------ACUGUGACGGc -5'
10566 5' -58.8 NC_002687.1 + 277395 0.67 0.905667
Target:  5'- cCGCGCuGCUaCUGCUGccGA-GCUGCUGa -3'
miRNA:   3'- -GCGCG-CGA-GACGGCuaCUgUGACGGC- -5'
10566 5' -58.8 NC_002687.1 + 28626 0.67 0.905667
Target:  5'- gGCagGUGCUCggcgGCCGGUGucauuaucaccGCAUUGCUGg -3'
miRNA:   3'- gCG--CGCGAGa---CGGCUAC-----------UGUGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.